PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G272700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 434aa MW: 48285.4 Da PI: 4.4833 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 54.6 | 3.6e-17 | 22 | 133 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat..gkrknratksgyWkatgkdkevlskkge 98 tde lv ++L+++ ++++l+ +++ +d v+P+d+ +e+ wy + d++ + ++ +r+tk+gyWk +++ + + +++ Seita.9G272700.1.p 22 TDEKLV-RFLAERKAKDPLPQ-NILVGLDFSLVDPRDFT-----TEDVWYMKLSDDQHPYNssEDGITRKTKNGYWKFMDSSR-IPT-STA 103 899999.99999999999999.88**************7.....56788876666665443125567899*******998865.444.589 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +g+k tL fy+g+a g+kt Wvmhey++ Seita.9G272700.1.p 104 IIGVKITLEFYEGHALCGTKTGWVMHEYQV 133 9***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-26 | 11 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.6 | 13 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-11 | 22 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MCLTDPVLAV AALGINIKDS WTDEKLVRFL AERKAKDPLP QNILVGLDFS LVDPRDFTTE 60 DVWYMKLSDD QHPYNSSEDG ITRKTKNGYW KFMDSSRIPT STAIIGVKIT LEFYEGHALC 120 GTKTGWVMHE YQVEHNEEAN LPQDYKSLCK VFLKGEKNIS DEIQQNSDNA DSPKDSFKAY 180 LQYLAKIEEP KQPVDADKQE ISSSKGQNEQ NTQHIADGID IDNVLANEDY IELNDLLYDD 240 DAVRNDALTL EDLDDLLIPQ ASAPTSTNSS KQSSAVHDAL EDLEDLLTPE ASASTSANSS 300 KRSMFSEECF DCDAFLREIL KDSNSNEGEN KDNKFSIAAP TNLVNVVISP SEQGLVKIHD 360 DNAIVAGTSQ HEPFPGGDRD EHSSSGFKQR SPSKSSCFPS RSDSSQSNIK CRREQSSSKF 420 GKIMKKYSCF RSL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G272700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022678496.1 | 0.0 | NAC domain-containing protein 7 | ||||
TrEMBL | A0A368SL56 | 0.0 | A0A368SL56_SETIT; Uncharacterized protein | ||||
STRING | Si036265m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10916 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 2e-15 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G272700.1.p |