PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G085700.1.p
Common NameLOC101773634, SETIT_036692mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 317aa    MW: 32747.2 Da    PI: 6.9138
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G085700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.27.3e-33139196259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+
  Seita.9G085700.1.p 139 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSTDPSVVITTYEGQHCHH 196
                         8******************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-33123196IPR003657WRKY domain
SuperFamilySSF1182903.27E-28130197IPR003657WRKY domain
PROSITE profilePS5081130.228133198IPR003657WRKY domain
SMARTSM007745.3E-38138197IPR003657WRKY domain
PfamPF031061.0E-25139196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MASAAGDSAE GVGGGDWPFA GVGGDAFAAE YSSVFAELGW PGGLAGELPV LDLPEAAAAP  60
PAEVTRPAEE VMAPARSGDA AASSSSSGDG DGAAPGSDDR RPAAAETASE KPAAAKKGQK  120
RARQPRFAFM TKSEIDHLED GYRWRKYGQK AVKNSPFPRS YYRCTNSKCT VKKRVERSST  180
DPSVVITTYE GQHCHHIGSY QRGGGGGAAA AHIHHSAAAV ALAEQMSSFI PAHQLYSLPP  240
LHPQSSPSSE TIVSPPASTS LQHLNGGADE LRRASYSPRV SMVQSPTTPS SSVSPAVSVE  300
KAGLLDDMVP QGVRHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-27129197876Probable WRKY transcription factor 4
2lex_A8e-27129197876Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G085700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586080.0KU058608.1 UNVERIFIED: Panicum miliaceum WRKY8-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981705.10.0probable WRKY transcription factor 57
TrEMBLK4ACT50.0K4ACT5_SETIT; Uncharacterized protein
STRINGSi036692m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.21e-43WRKY DNA-binding protein 57