PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.8G098000.1.p | ||||||||
Common Name | SETIT_028088mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 331aa MW: 34875.8 Da PI: 4.7455 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49 | 1.5e-15 | 161 | 210 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr ++ +g+++AeIrd + k +r+++g+f+++e Aa a+++a+ + +g Seita.8G098000.1.p 161 FIGVRKRP-WGKFAAEIRDsT--R-KGARVWIGTFDSPEAAALAYDQAAFAARG 210 57******.**********32..2.24**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.7E-30 | 160 | 224 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.167 | 160 | 218 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-10 | 161 | 172 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.11E-17 | 161 | 219 | No hit | No description |
SuperFamily | SSF54171 | 2.75E-20 | 161 | 220 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.0E-11 | 161 | 210 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-26 | 161 | 218 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-10 | 200 | 220 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MEQEHFTSYA SYHHPAPDPD LSPALDATQS DMLLQLKAFL LDGIDSEPPA EVCSGWSSPS 60 SSTVDVCSEM QAAMGPSTIR DHQHWSPGTV DTVDMPLDID AFLIGSNADA AAAEECSDWL 120 SPSSSTSSEV ANVSPSTPDV HQRPDAGTGP AASPGDKRQA FIGVRKRPWG KFAAEIRDST 180 RKGARVWIGT FDSPEAAALA YDQAAFAARG TTAVLNFPVE CVRESLGPLA LAGGAGCGSP 240 VLALKRRHSK RTRRRKVSPT GFSNSKSTLQ DLQPPAGQCS VVSGTAVDMP QQQATVSISQ 300 CPSGIVELDD LGDAYLEKLL RVVSSELGEH * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-23 | 146 | 221 | 4 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.8G098000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022685223.1 | 0.0 | ethylene-responsive transcription factor ERF094-like | ||||
Swissprot | Q8VYM0 | 4e-40 | ERF93_ARATH; Ethylene-responsive transcription factor 15 | ||||
TrEMBL | A0A368S669 | 0.0 | A0A368S669_SETIT; Uncharacterized protein | ||||
STRING | Si028088m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP27648 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31230.1 | 5e-25 | ethylene-responsive element binding factor 15 |
Link Out ? help Back to Top | |
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Phytozome | Seita.8G098000.1.p |
Publications ? help Back to Top | |||
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