PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G012500.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 272aa    MW: 30378.1 Da    PI: 5.8122
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G012500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY573.9e-18136182246
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTT CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpk 46 
                          Dg++WrKYGqK+++g ++pr+YYrC+++  +C ++k ve+++++  
  Seita.8G012500.1.p 136 YDGHQWRKYGQKNINGRQHPRNYYRCAYRerNCLATKTVEQQEQNAG 182
                         59**************************999*********9987643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-21121207IPR003657WRKY domain
SuperFamilySSF1182902.48E-18129206IPR003657WRKY domain
SMARTSM007745.7E-25135207IPR003657WRKY domain
PROSITE profilePS5081116.053137180IPR003657WRKY domain
PfamPF031069.8E-23137206IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDSKSSLTMP PCGHGEEMME AMMRQQELVM QLRALVLPLL HGVDYTSADI AVQLFDDVIG  60
CNISVASKLE GCLMSTGAGG GTMVELVDDK SLVRKSMTSS TTGDRTEGQV KPNSVGQKRR  120
RNDKRSRSLV THVPHYDGHQ WRKYGQKNIN GRQHPRNYYR CAYRERNCLA TKTVEQQEQN  180
AGTSSAMAVE ENAKYTVVYY GDHTCKNHST SMVQAPQLVN MDLHNGEMDQ TTTNAQEPEA  240
DLDLPALLEV FDSSLINWQD WNEDVIYNLS P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G012500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980128.10.0probable WRKY transcription factor 26
TrEMBLA0A368S3780.0A0A368S378_SETIT; Uncharacterized protein
STRINGSi027876m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15881913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.14e-15WRKY DNA-binding protein 46