PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.7G191200.1.p | ||||||||
Common Name | SETIT_012008mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 581aa MW: 60922.2 Da PI: 6.7487 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.9 | 7.9e-05 | 97 | 114 | 2 | 19 |
EETTTTEEESSHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrH 19 +C++Cgk F++++++ +H Seita.7G191200.1.p 97 VCKNCGKEFTSWELFLQH 114 7****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.19E-5 | 16 | 42 | No hit | No description |
SMART | SM00355 | 0.96 | 19 | 41 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.972 | 19 | 46 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.0021 | 20 | 41 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 21 | 41 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 260 | 96 | 116 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.4E-9 | 265 | 290 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.76E-8 | 265 | 288 | No hit | No description |
SMART | SM00355 | 0.13 | 266 | 288 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.221 | 266 | 293 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 268 | 288 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.76E-8 | 381 | 408 | No hit | No description |
SMART | SM00355 | 3.7 | 386 | 408 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.9E-11 | 386 | 409 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.182 | 386 | 408 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 388 | 408 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 581 aa Download sequence Send to blast |
MPPSPSPPRP PGQPPEYKHF CRVCNKGFTC GSALGGHMRA HGASDADGFG ADDDSLGDEA 60 SARCRASEDR WDAVGTSATH AYALRANPNR LIRSCQVCKN CGKEFTSWEL FLQHGKCNSE 120 DEGEELADGW GSMRSSSPPS DADGEEDPAV ATAWSKGKRS RRVKLMIGGE DHSSVVPSRR 180 DTSREEEDLA NCLVMLSSSN VKQPTVVVET GQEEPCASAA KEGDGGPPLQ LQPISFFVPA 240 SEPVVALPSA VAVTPQYISP ASRNVFECKA CKKVFTSHQA LGGHRASHKK VKGCFAAKFE 300 SKANEPTRLL VTGDPNNVTG KRATVDETNA GVSTDAKASV YTATTNADTN AGTSEAAASL 360 SMAIGHNPPV TMLTTASSCK KNTKMHECSV CHRLFTSGQA LGGHKRCHWL TSSTADPCNT 420 VANMIPPLTE DLVGVVRHQL SLRPMVDAPE PVLDLTMAAI PSGLAAATAR PEAGGNSFRL 480 DALAPVHLQP LAVAVPSTAS HRKKTTATSS HHGIDTVAEE DEADSTTAKR AKLSDLKDVV 540 SMDGEPTGPW LQVGIGGSSS AGALFSLSTS SVVLGRLHIA * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.7G191200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004978170.1 | 0.0 | uncharacterized protein LOC101762393 | ||||
TrEMBL | A0A368RXD9 | 0.0 | A0A368RXD9_SETIT; Uncharacterized protein | ||||
STRING | Si012008m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3524 | 32 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35280.1 | 6e-20 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.7G191200.1.p |