PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G063700.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 386aa    MW: 41977.9 Da    PI: 8.0467
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G063700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.70.00011225280555
                         HHHHHHHHHHHHHHHHHHHHC..TSCCC.....TTS-.STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLre..llPkas..kapskK.lsKaeiLekAveYIksLq 55 
                         h+++Er RR++i +++ + ++  l+P +   + +     +Ka++L + ++Y+k Lq
  Seita.6G063700.1.p 225 HSIVERLRREKISDRMKNCKTlsLIPIRLqlQLKFLElADKASVLDEIIDYVKFLQ 280
                         99**************888761157763357444444489**************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.14802.3E-131155No hitNo description
PfamPF052219.2E-121355IPR000043Adenosylhomocysteinase
SuperFamilySSF522837.82E-141355No hitNo description
SuperFamilySSF474591.96E-8218290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.17E-6218284No hitNo description
PROSITE profilePS5088811.877220279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-9222289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006730Biological Processone-carbon metabolic process
GO:0004013Molecular Functionadenosylhomocysteinase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MVLSVEKTSS GREYKVKDLS QADFGRLEIE LAEVEMPVLM ACRTEFGPSK PFAGAGQQEL  60
RPEGGPAADQ RDNAPSPPSP SASYKSGPRR LLLSLDENAA GPDGGNRRRE FLMNESKEFI  120
SCRLPSFANV HETSVVASGF KIHKQEQNPM CNVPIPTFTA RNQMTVTTTQ GAQIPQKMPS  180
WVNENKSECP VSRPPDVQNQ ANSAANGVSV KPRVRARRGQ ATDPHSIVER LRREKISDRM  240
KNCKTLSLIP IRLQLQLKFL ELADKASVLD EIIDYVKFLQ LQLKVLSMSR LGAPGAVLPL  300
LAESQTEGCH GQPLSAATNA QGLLDTQDSE DALAFEEEVV KLMETSITSA MQYLQNKGLC  360
LMPVALAPAI STQKGASGAA TPRER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ond_A3e-21155458Adenosylhomocysteinase
3ond_B3e-21155458Adenosylhomocysteinase
3one_A3e-21155458Adenosylhomocysteinase
3one_B3e-21155458Adenosylhomocysteinase
3onf_A3e-21155458Adenosylhomocysteinase
3onf_B3e-21155458Adenosylhomocysteinase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G063700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702221.10.0LOW QUALITY PROTEIN: transcription factor bHLH23-like
TrEMBLA0A368RIM90.0A0A368RIM9_SETIT; Uncharacterized protein
STRINGSi006332m1e-170(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.13e-42LJRHL1-like 1