PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G273000.1.p | ||||||||
Common Name | SETIT_004194mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ZF-HD | ||||||||
Protein Properties | Length: 242aa MW: 26189.9 Da PI: 7.7308 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 85.9 | 4.3e-27 | 18 | 70 | 5 | 56 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRre 56 +Y eClkNhAasl gha+DG gEfmps+++ +++a+l+CaACgCHRnFH r Seita.5G273000.1.p 18 VYWECLKNHAASLDGHALDGYGEFMPSPEAGpADPASLQCAACGCHRNFHYRL 70 79**************************9999******************885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.3E-22 | 18 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.2E-25 | 19 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 4.0E-18 | 19 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.22 | 19 | 70 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-7 | 179 | 211 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MWPAARRRRR GGAGEAGVYW ECLKNHAASL DGHALDGYGE FMPSPEAGPA DPASLQCAAC 60 GCHRNFHYRL REAPPSPPLL TLPHPLPAQP APVPQHVMRE APEDRLPAAF EDDELDEGSD 120 FDEDCPLSPL PAPAMGPPRY LQPAPHMLLA LSTGAPSASI PTMVPRPPAS LGSMPALGAG 180 SAAARKRFRT KFIPEQKQRM QALSERLGCH LQMVCCPGGR EEGGLGEKWR WRRGDGWRRV 240 C* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G273000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972095.1 | 1e-150 | zinc-finger homeodomain protein 10 | ||||
Swissprot | Q6ER21 | 2e-34 | ZHD9_ORYSJ; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | K3XQK8 | 1e-171 | K3XQK8_SETIT; Uncharacterized protein | ||||
STRING | Si004194m | 1e-172 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3646 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 4e-30 | zinc finger homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G273000.1.p |