PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G372200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 327aa MW: 37539.2 Da PI: 10.3128 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.6 | 4e-17 | 26 | 115 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ffkv+ +k+g +++p+kf+ ++ ++ s +l+le ++g+++ v++ +++ vl++GW +F+ a +Lk gD +vF+ ++s f Seita.3G372200.1.p 26 FFKVM--MGDFKNG-VTIPRKFVVNIR--EHLSEELKLEAPDGKTYAVQV--ATEQNELVLRTGWPDFATAYELKFGDLLVFRNCKNSHF- 108 77888..5566666.********8886..558899***************..99999**************************5565666. PP .EEEEE-S CS B3 92 lvvkvfrk 99 +v++f+ Seita.3G372200.1.p 109 -KVRLFDP 115 .8888875 PP | |||||||
2 | B3 | 53.4 | 4.7e-17 | 231 | 323 | 7 | 99 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 ++++++++ l + ++a+++ ++e++t++l+ + +We + r k +ry+l++GW++Fv++n+Lk gD+++F+l+++ ++ ++ Seita.3G372200.1.p 231 RNSNTARAFLEFAIDYATKYL--PRENQTMRLRRPGPskdDTWEALF--RVKNRRYTLGRGWRHFVDDNKLKPGDICLFSLMKNtKNLTMD 317 555666666777777777774..456679999996555569******..999999***************************999****** PP EEEE-S CS B3 94 vkvfrk 99 v+++rk Seita.3G372200.1.p 318 VHIIRK 323 ***997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.7E-21 | 22 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.139 | 23 | 116 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.14E-21 | 23 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.15E-17 | 24 | 114 | No hit | No description |
SMART | SM01019 | 4.4E-12 | 26 | 116 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.4E-15 | 26 | 114 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.79E-21 | 219 | 323 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-20 | 219 | 323 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.07E-15 | 224 | 322 | No hit | No description |
PROSITE profile | PS50863 | 13.479 | 225 | 324 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.5E-7 | 226 | 324 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.5E-15 | 231 | 323 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MNKPSAVCKE CIAHHYWHHM DDQKRFFKVM MGDFKNGVTI PRKFVVNIRE HLSEELKLEA 60 PDGKTYAVQV ATEQNELVLR TGWPDFATAY ELKFGDLLVF RNCKNSHFKV RLFDPSGCEK 120 ELSCVLMDGA PCVQERKVSH GDHTQSPTGK RMEIGSPSGS RKTSKMNPID SPSQRRGHVP 180 SARTKSPRHG VAKPPYILPR YTTLNDQQKN EVDKKVGAIE SKIPIYVATM RNSNTARAFL 240 EFAIDYATKY LPRENQTMRL RRPGPSKDDT WEALFRVKNR RYTLGRGWRH FVDDNKLKPG 300 DICLFSLMKN TKNLTMDVHI IRKRSM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G372200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963037.1 | 0.0 | B3 domain-containing protein LOC_Os12g40080 | ||||
TrEMBL | A0A368QMS7 | 0.0 | A0A368QMS7_SETIT; Uncharacterized protein | ||||
STRING | Si022802m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2901 | 29 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-23 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G372200.1.p |