PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G068200.1.p
Common NameLOC101782381, SETIT_022363mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 379aa    MW: 42402.1 Da    PI: 7.8088
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G068200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002793115323
                         ET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                         C+  +Cgk+F + s L++H  +H
  Seita.3G068200.1.p  93 CSyeNCGKTFVDVSALRKHAHVH 115
                         77779**************9887 PP
2zf-C2H219.92e-06120144123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         y C+  +Cgk F ++s LkrH  tH
  Seita.3G068200.1.p 120 YICSepNCGKKFVDSSKLKRHYLTH 144
                         889999****************999 PP
3zf-C2H2201.9e-06150174123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         ++Cp   Cgk Fs   nL++H++tH
  Seita.3G068200.1.p 150 FVCPhpGCGKAFSLDFNLRSHLKTH 174
                         89**********************9 PP
4zf-C2H216.62.2e-05180204123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         + Cp   Cgk+F++ s L++H ++H
  Seita.3G068200.1.p 180 HICPfpACGKRFTSDSKLRVHVKSH 204
                         5799999****************99 PP
5zf-C2H217.21.4e-05241266123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                         y+Cp   C+k + +++ L+ H++t H
  Seita.3G068200.1.p 241 YVCPyeGCDKAYIHSYKLNLHLKTqH 266
                         99*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.3E-1386115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01391115IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.84391120IPR007087Zinc finger, C2H2
PROSITE patternPS00028093115IPR007087Zinc finger, C2H2
SuperFamilySSF576679.54E-994144No hitNo description
Gene3DG3DSA:3.30.160.601.3E-13117140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0011120144IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.316120149IPR007087Zinc finger, C2H2
PROSITE patternPS000280122144IPR007087Zinc finger, C2H2
SuperFamilySSF576672.14E-12131183No hitNo description
Gene3DG3DSA:3.30.160.604.7E-19141175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.3E-4150174IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.926150179IPR007087Zinc finger, C2H2
PROSITE patternPS000280152174IPR007087Zinc finger, C2H2
SuperFamilySSF576676.48E-5174205No hitNo description
Gene3DG3DSA:3.30.160.608.9E-9178204IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0032180204IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.616180209IPR007087Zinc finger, C2H2
PROSITE patternPS000280182204IPR007087Zinc finger, C2H2
SuperFamilySSF576671.68E-6234266No hitNo description
Gene3DG3DSA:3.30.160.606.3E-10237266IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0036241266IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.85241274IPR007087Zinc finger, C2H2
PROSITE patternPS000280243266IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MAMEYPAAAA GSGGYKYYYP PQHPQPQAVR RPPRPAARWV KQWIPQDLAS TGGKCSLFKW  60
VREDGHRSSK ETPKVLEVDA PKPEPTTEIL FLCSYENCGK TFVDVSALRK HAHVHNEKQY  120
ICSEPNCGKK FVDSSKLKRH YLTHTGQKDF VCPHPGCGKA FSLDFNLRSH LKTHALENYH  180
ICPFPACGKR FTSDSKLRVH VKSHEKTGTP VTVQHTPPAE KPHSTPKPST PATTSFADRP  240
YVCPYEGCDK AYIHSYKLNL HLKTQHPEHG QEENGKLSAS AGHHGVNEPT YQYSYAEIGE  300
TASHPKRSKT HKSHSSKVYN AKISSVMPSN ISGVKNQWSG KAGYEDDSEE TEEDGGNNIE  360
DDWRYGNNVD DEETQDED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-33932648119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G068200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0371600.0BT037160.1 Zea mays full-length cDNA clone ZM_BFb0157B04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960546.10.0zinc finger transcription factor YY1
SwissprotQ2V3L31e-104YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLK3Z7430.0K3Z743_SETIT; Uncharacterized protein
STRINGSi022363m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-101C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]