PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G291300.1.p | ||||||||
Common Name | LOC101786916, SETIT_031077mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bZIP | ||||||||
Protein Properties | Length: 217aa MW: 22457.3 Da PI: 8.7262 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 56.3 | 7.1e-18 | 145 | 196 | 3 | 54 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +++r +r++kNRe+A rsR+RK+a++ eLe++v+ L++eN++L+ + e+l+ Seita.2G291300.1.p 145 SDRRKKRMIKNRESAARSRARKQAYVRELEREVQLLQQENESLRVKYEQLRV 196 689******************************************9999975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.9E-13 | 143 | 210 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.151 | 145 | 195 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.5E-15 | 145 | 198 | No hit | No description |
Pfam | PF00170 | 1.2E-15 | 146 | 197 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 6.39E-23 | 147 | 194 | No hit | No description |
SuperFamily | SSF57959 | 8.75E-13 | 147 | 196 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 150 | 165 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MAAMDLEDDE DIWGKTASSP SASPTPLTTA VVAPCGAFIS TQLSLNSRLQ LLSTTAAAGG 60 SSPPHSVGAG IFAADGLRHH VGLGDGGGGG FRNAPASPAP FFSAYGLDAG GGVAPIDAGA 120 ARSALEDEMC VGPGTAWAGA GVGGSDRRKK RMIKNRESAA RSRARKQAYV RELEREVQLL 180 QQENESLRVK YEQLRVSVEV PVPVKKTLQR MPSAPF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G291300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF093789 | 3e-76 | EF093789.1 Zea mays delayed flowering1 (DLF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957504.1 | 1e-156 | ABSCISIC ACID-INSENSITIVE 5-like protein 5 | ||||
TrEMBL | K3ZWU5 | 1e-155 | K3ZWU5_SETIT; Uncharacterized protein | ||||
STRING | Si031077m | 1e-155 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9764 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17770.2 | 2e-17 | basic region/leucine zipper motif 27 |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G291300.1.p |
Entrez Gene | 101786916 |