PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G204500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ZF-HD | ||||||||
Protein Properties | Length: 368aa MW: 37837.5 Da PI: 8.1774 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 107.4 | 8.3e-34 | 39 | 93 | 5 | 58 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 Y+eClkNhAaslGghavDGCgEfmps+g++ +++++lkCaACgCHRnFHRr ve Seita.2G204500.1.p 39 LYRECLKNHAASLGGHAVDGCGEFMPSPGANpADPTSLKCAACGCHRNFHRRAVE 93 7***************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.0E-28 | 39 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.207 | 40 | 91 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.3E-31 | 40 | 91 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 8.0E-23 | 40 | 90 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 4.54E-16 | 208 | 276 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.2E-28 | 210 | 277 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.0E-23 | 218 | 274 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MEAMDVKYKP LMFPNGAAVK KVKPAAVVPA AVAAAGEPLY RECLKNHAAS LGGHAVDGCG 60 EFMPSPGANP ADPTSLKCAA CGCHRNFHRR AVEGSPPPPA PLALPPPPVP PSVLHGQPHR 120 GGEETPEDRL PGVADDSDSD SDGSEYDEER SVSPPPPPHH VPAPVAQQPP PPAYFTIPSA 180 SHMLLSLGSG AQGAAAQRLP PAQLTPSSAP PPGGAMPRKR FRTKFTAEQK QRMQELSERL 240 GWRLQKRDEA IVDEWCRDIG VGKGVFKVWM HNNKHNFLGG HSARRSASSS APAGPGAGAA 300 PVHTSTANAG VAAPSFSPSA ITPPPPVLTS SPPTATGFNI NGAASSAPTV TAGHPDNVNG 360 PSSPQSA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 3e-21 | 218 | 276 | 17 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G204500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063244 | 0.0 | BT063244.1 Zea mays full-length cDNA clone ZM_BFc0042E24 mRNA, complete cds. | |||
GenBank | EU963746 | 0.0 | EU963746.1 Zea mays clone 272337 ZF-HD homeobox protein mRNA, complete cds. | |||
GenBank | JX428511 | 0.0 | JX428511.1 Zea mays subsp. mays clone pUT3109 ZHD2 ZF-HD type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012698877.1 | 0.0 | zinc-finger homeodomain protein 9 | ||||
Swissprot | Q6ER21 | 1e-101 | ZHD9_ORYSJ; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A368Q369 | 0.0 | A0A368Q369_SETIT; Uncharacterized protein | ||||
STRING | GRMZM2G161315_P01 | 1e-154 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3646 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 1e-25 | zinc finger homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G204500.1.p |