PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G061200.1.p | ||||||||
Common Name | LOC101785953, SETIT_016630mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ARR-B | ||||||||
Protein Properties | Length: 635aa MW: 69271.5 Da PI: 6.6177 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.5 | 6.1e-28 | 210 | 263 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ +t+e+v+SHLQkYRl Seita.1G061200.1.p 210 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVENITRENVASHLQKYRL 263 79*******************.********************************8 PP | |||||||
2 | Response_reg | 79.5 | 1.2e-26 | 28 | 136 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 vl vdD+p+ +++l+++l + +y +v+++ ++ al+ll+ek+ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+ge +++ + Seita.1G061200.1.p 28 VLAVDDDPTCLKVLENLLLRCQY-HVTTTGQAATALKLLREKKdqFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETQTVMKG 116 799********************.***************888888*******************87754.558****************** PP HHTTESEEEESS--HHHHHH CS Response_reg 90 lkaGakdflsKpfdpeelvk 109 + Ga d+l Kp+ +e+l++ Seita.1G061200.1.p 117 ITHGACDYLLKPVRIEQLRT 136 ******************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 3.2E-200 | 1 | 634 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 7.68E-35 | 25 | 146 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.8E-42 | 25 | 168 | No hit | No description |
SMART | SM00448 | 5.0E-32 | 26 | 138 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.159 | 27 | 142 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 8.0E-24 | 28 | 137 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 8.29E-27 | 29 | 141 | No hit | No description |
SuperFamily | SSF46689 | 6.09E-20 | 207 | 267 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.34 | 207 | 266 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-29 | 208 | 268 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-24 | 210 | 263 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.3E-6 | 212 | 262 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 635 aa Download sequence Send to blast |
MTVEEVKLQA KANGGHGAKD QFPVGMRVLA VDDDPTCLKV LENLLLRCQY HVTTTGQAAT 60 ALKLLREKKD QFDLVISDVH MPDMDGFKLL ELVGLEMDLP VIMLSANGET QTVMKGITHG 120 ACDYLLKPVR IEQLRTIWQH VVRRKSSDAK NHGNDNDDSD KKLQLASAEG DNGGVNRNKR 180 TSRKGRDDNG DDGDDSDDSN ENGDSSTQKK PRVVWSVELH RKFVAAVNQL GIDKAVPKKI 240 LDLMNVENIT RENVASHLQK YRLYLKRLSA DASRQANLTA AFGGRNPAYV NMGLEAFRHY 300 NAYGRYRPVP TTNHSQSNNL LARMNSPAFG MHGLLPSQPL QIGHTQNNMS TSLGNVGGMN 360 SGNLIRGAHM PLQDSSKCFP TGPSGNSFPN ISNSTALVPT NNLPLQSLEP SNQQHLGRMH 420 SSSADPFNSF VGESPQFPDL GRCNTTWPTA VSSSNIHELG QKDSMPQPNL RANGPKLEPL 480 SSFTEASSQI PLLGNEMQSQ VASLASNGLP MPFNQEAVPF AYRSSTNSRD MLNNNLALSN 540 SGINSSLPNL RLDNSMVPRQ TLDGGNSGGV PPLQDGRIDQ QAVNSQLNYN NDLMGTSRLQ 600 RGLSGGLDDI VVDMFRPDRS DDSIPFIDGD WELV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 5e-25 | 206 | 269 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00072 | SELEX | Transfer from AT4G31920 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G061200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ858745 | 0.0 | HQ858745.1 Zea mays clone UT1443 ARR-B transcription factor mRNA, partial cds. | |||
GenBank | HQ858760 | 0.0 | HQ858760.1 Zea mays clone UT1502 ARR-B transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022682995.1 | 0.0 | two-component response regulator ORR24 | ||||
Swissprot | Q6H805 | 0.0 | ORR24_ORYSJ; Two-component response regulator ORR24 | ||||
TrEMBL | K3YQT6 | 0.0 | K3YQT6_SETIT; Two-component response regulator | ||||
STRING | Si016630m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8147 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-108 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G061200.1.p |
Entrez Gene | 101785953 |
Publications ? help Back to Top | |||
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