PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G036000.1.p
Common NameLOC101772048, SETIT_019098mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 331aa    MW: 37273 Da    PI: 8.1712
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G036000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.94.8e-19111175359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.....STTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.....dpkvveitYegeHnhe 59 
                         Dg +WrKYGqK+++++++prsYYrCt++   gC+++k v+++++      p + +++Y+g+H+++
  Seita.1G036000.1.p 111 DGRQWRKYGQKHINKAKHPRSYYRCTYRqeqGCKATKTVQQKDDstgtdHPVMYTVVYHGQHTCK 175
                         999************************98899********987522221467899********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-21102175IPR003657WRKY domain
SuperFamilySSF1182906.8E-20106175IPR003657WRKY domain
SMARTSM007741.1E-27109176IPR003657WRKY domain
PfamPF031067.1E-23111175IPR003657WRKY domain
PROSITE profilePS5081115.101111151IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MKEIATGQSL VTQLRAIVLP ALQAYQRCEL AAQMFQNILD CSSKAITELQ FHHQSDARAD  60
DALVDDKKRV RRISSDDCIN EEGGTANPHH QHKRRKSDDS VSLETPVPRY DGRQWRKYGQ  120
KHINKAKHPR SYYRCTYRQE QGCKATKTVQ QKDDSTGTDH PVMYTVVYHG QHTCKDNNGV  180
ESSTDDSETI TQSSSDSRSS VSTTCTDAYE HQTSLDNDKP LDKSANSISK AFCLLIYQFS  240
HAFLFLIFCL PNSRGEIIPY RDISHGGGGG FDCPGKYLWR ILPPGLMCLC CQISPKTIGC  300
IRMGRMQYNL SCPLFFSPKY NSVLDIKFGF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-141111751069OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G036000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703156.10.0probable WRKY transcription factor 70 isoform X2
TrEMBLK3YXV00.0K3YXV0_SETIT; Uncharacterized protein
STRINGSi019098m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.19e-19WRKY DNA-binding protein 70