PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3318s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 324aa    MW: 37192 Da    PI: 8.8155
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3318s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538e-172166147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                            rg W + Ed++l ++v+q+G  +W+ Ia+++  gR++k+c++rw++ 
  SapurV1A.3318s0020.1.p 21 RGHWRPAEDDKLRQLVEQYGAQNWNYIAEKLR-GRSGKSCRLRWFNQ 66
                            899*****************************.***********996 PP
2Myb_DNA-binding55.21.7e-1773116146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             r ++++eE+e+l+ a++ +G++ W++Iar ++ gRt++++k+ w+ 
  SapurV1A.3318s0020.1.p  73 RRPFSEEEEERLLAAHRVHGNK-WALIARLFP-GRTDNSVKNQWHV 116
                             679*******************.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.3721667IPR017930Myb domain
SuperFamilySSF466891.05E-2820114IPR009057Homeodomain-like
SMARTSM007171.0E-122069IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-262274IPR009057Homeodomain-like
PfamPF139211.0E-162484No hitNo description
CDDcd001678.00E-122465No hitNo description
PROSITE profilePS5129425.70368122IPR017930Myb domain
SMARTSM007172.5E-1572120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2175121IPR009057Homeodomain-like
CDDcd001671.35E-684115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEEYSLAGNS SDDAKSPACP RGHWRPAEDD KLRQLVEQYG AQNWNYIAEK LRGRSGKSCR  60
LRWFNQLDPR INRRPFSEEE EERLLAAHRV HGNKWALIAR LFPGRTDNSV KNQWHVIMAR  120
KQREQSKVCG KRYQDSLSES NPSSSSSHAR KSRTQELFSS RIGFDQYSRE WEFRNPSKDR  180
IFSISASTSS PCWNFPPSTL AASNNSYSVD LSRSKGRDHY FSSSLFCTTE SSKISDQSIY  240
RYRENSSTCS RNWSSSIFGL PNYRRAVPSP LGYLKLGDDF ENHGMIKKEL SCHNHDQEQG  300
DDHESIRHED VPFIDFLGVG ISS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-31171213107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.3318s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164550.0AC216455.1 Populus trichocarpa clone POP032-C02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010999840.11e-175PREDICTED: transcription factor MYB23-like
TrEMBLA0A0E4FJ101e-175A0A0E4FJ10_POPPZ; MYB transcriptional factor
STRINGPOPTR_0005s20870.11e-174(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.12e-59myb domain protein 52