PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2714s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family M-type_MADS
Protein Properties Length: 206aa    MW: 23071.7 Da    PI: 5.2224
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2714s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.54.7e-151562148
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                            krie +  r vtfskRr+gi KK +EL  L++ae+a ++fs+ gk + 
  SapurV1A.2714s0010.1.p 15 KRIEKEDDRLVTFSKRRAGIYKKLSELVALTGAEIACLVFSPGGKPFS 62
                            79****************************************998655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.189767IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-23766IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.67E-24879IPR002100Transcription factor, MADS-box
CDDcd002651.84E-31881No hitNo description
PRINTSPR004041.4E-15929IPR002100Transcription factor, MADS-box
PfamPF003193.0E-191663IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-152944IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-154465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MEGKKTRGRQ KVEMKRIEKE DDRLVTFSKR RAGIYKKLSE LVALTGAEIA CLVFSPGGKP  60
FSYGHPSFEN VLDRFLENPS STDGGGDELA ELYRRARIGE LAQKYNEMQQ QLEDGKEKGN  120
KLKDKMEGNE GEDWWNSPAE ELNLQELIEL EKKFESLQMM LHNKIKDSNN GASSSHAPEI  180
GQPHAYDPNF AFDHGSDWGA GSSGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2714s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032119.11e-110PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLB9HP411e-103B9HP41_POPTR; Uncharacterized protein
STRINGPOPTR_0009s05050.11e-104(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.12e-32AGAMOUS-like 57