PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.2191s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB | ||||||||
Protein Properties | Length: 231aa MW: 26396.5 Da PI: 6.1605 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.4 | 2.4e-16 | 12 | 59 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W +eEd++l+ v+ +G g+W++++++ g+ R++k+c++rw +yl SapurV1A.2191s0020.1.p 12 KGLWKPEEDLILKAHVETHGEGNWSAVSKRSGLMRCGKSCRLRWKNYL 59 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.8 | 3.7e-16 | 65 | 110 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE++ +++ +k+lG++ W++Ia +++ gRt++++k++w+++l SapurV1A.2191s0020.1.p 65 RGGMSQEEEDMIIRMHKLLGNR-WALIAGRIP-GRTDNDVKNYWNTHL 110 6779******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-23 | 7 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.835 | 7 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.33E-28 | 9 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-13 | 11 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 12 | 59 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.00E-10 | 15 | 59 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-22 | 63 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-15 | 64 | 112 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.048 | 64 | 114 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.4E-14 | 65 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.88E-11 | 68 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MESEGAKPEF KKGLWKPEED LILKAHVETH GEGNWSAVSK RSGLMRCGKS CRLRWKNYLR 60 PNIKRGGMSQ EEEDMIIRMH KLLGNRWALI AGRIPGRTDN DVKNYWNTHL NNRSPSRKRK 120 TIDSELDQND EEKQNKSKRL RSPSNSQPTC NAIAVGSAEE LEGKKPENEG GGGAVSDAWI 180 QRDAQSMNYY IESPMMLDNN ATTFVYEDEP FLDYWDSFVM FESLDFGGDW * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-25 | 8 | 108 | 23 | 122 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 115 | 120 | SRKRKT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.2191s0020.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002308975.1 | 1e-130 | transcription factor WER | ||||
Swissprot | Q9LTF7 | 3e-60 | MYB82_ARATH; Transcription factor MYB82 | ||||
TrEMBL | B9HA93 | 1e-129 | B9HA93_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s06530.1 | 1e-129 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13545 | 20 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 7e-63 | myb domain protein 82 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.2191s0020.1.p |