PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.2099s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 236aa MW: 26765 Da PI: 9.9767 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.3 | 1.7e-18 | 18 | 62 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ eEdel+++++ +lG++ W++Ia++++ gRt++++k++w+++ SapurV1A.2099s0020.1.p 18 RGNFSDEEDELIINLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 62 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-7 | 6 | 24 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.01E-19 | 6 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.818 | 13 | 67 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-17 | 17 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-17 | 18 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.20E-13 | 20 | 63 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-24 | 25 | 64 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence Send to blast |
MKRKQLRWIN YLRPDLKRGN FSDEEDELII NLHSLLGNKW SLIAARLPGR TDNEIKNYWN 60 THIKRNSTVH STPPPSTQLH HYKQHQHKNS SMGTKRITNF KREEQNYSLV QVQPELITMS 120 NIIKVGGSSD SAEDSNSSSG VTTELEVYPK HKLNLELSIG LPCQSQLSSI NDLNDSKQAN 180 QRHQEQVVTH QSSATSATPF SRAPAVVHRT ACLCTYNRGF KKSVTADRFY RPLDA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-16 | 7 | 65 | 48 | 106 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.2099s0020.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011001250.1 | 1e-121 | PREDICTED: transcription repressor MYB6-like | ||||
Refseq | XP_011015999.1 | 1e-121 | PREDICTED: transcription repressor MYB6-like | ||||
TrEMBL | B9IP37 | 1e-117 | B9IP37_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s00750.1 | 1e-117 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G16720.1 | 2e-37 | myb domain protein 7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.2099s0020.1.p |