PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1985s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 321aa    MW: 36298.6 Da    PI: 9.141
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1985s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.9e-171461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd++l d+++ +G g+W++ ++  g+ R++k+c++rw +yl
  SapurV1A.1985s0010.1.p 14 KGAWTKEEDQRLMDYIRVHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                            79******************************99************97 PP
2Myb_DNA-binding569.3e-1867111147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg++T eEde +++++ +lG++ W++Ia +++ gRt++++k++w+++
  SapurV1A.1985s0010.1.p  67 RGNFTDEEDEVIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                             89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-23564IPR009057Homeodomain-like
PROSITE profilePS5129417.402961IPR017930Myb domain
SuperFamilySSF466896.47E-2913108IPR009057Homeodomain-like
SMARTSM007172.0E-121363IPR001005SANT/Myb domain
PfamPF002495.2E-151461IPR001005SANT/Myb domain
CDDcd001671.60E-91661No hitNo description
PROSITE profilePS5129428.53662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-2865117IPR009057Homeodomain-like
SMARTSM007171.3E-1666114IPR001005SANT/Myb domain
PfamPF002491.6E-1567111IPR001005SANT/Myb domain
CDDcd001672.32E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGRSPCCEKE HTNKGAWTKE EDQRLMDYIR VHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TDEEDEVIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLISRG  120
IDPQTHRPLN EKTAAAAATT TSNTTATIKT TTSSAAAAKV THLEFKNTPP QSLAEISLLK  180
SQLDFKHNNN FHSSQYSSFN PKKTETPSAE ENNCTSSSMT TDEEQQQKQQ KRESHQNQDV  240
NLDLTIGLAP AKTFSPNSAE SRIQQPVSST CHLLGSVLTR PGCLCWQMEG ERRELCRNCQ  300
NQNQSSKSNH NNNGLYYRYY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-281311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1985s0010.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001099.10.0PREDICTED: transcription repressor MYB6
SwissprotQ388511e-90MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A2K1Y4451e-176A0A2K1Y445_POPTR; Uncharacterized protein
STRINGPOPTR_0013s11360.11e-177(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-89myb domain protein 6