PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1537s0010.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C3H

Protein Properties

Length: 274aa MW: 30179.1 Da PI: 8.4897

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1537s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.7	1.1e-09	22	47	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+ C f GtC+ G++C+FaHg+ SapurV1A.1537s0010.1.p 22 FKTRVCAKFKT-GTCRNGENCNFAHGM 47 69*****99.***********95 PP
2	zf-CCCH	26.7	9.5e-09	86	109	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k++lC+ + + +C+yGdrC+F H SapurV1A.1537s0010.1.p 86 KMKLCKKLYNGEECPYGDRCNFLH 109 789*****66********** PP
3	zf-CCCH	42.8	8.4e-14	171	196	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC + tG+C++G++C+FaHg SapurV1A.1537s0010.1.p 171 WKTKLCTKWEMTGQCPFGEKCHFAHG 196 8************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	9.5E-15	17	54	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.35E-8	19	52	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.253	21	48	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.7E-6	21	47	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-7	22	47	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.1E-7	83	111	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.859	84	112	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.12	84	111	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.4E-9	86	110	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.7E-6	86	109	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.4E-17	165	201	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.31E-10	169	201	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.544	170	198	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.1E-7	170	197	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.3E-11	171	196	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MSSRVPPTNS LPVHKGTTNI FFKTRVCAKF KTGTCRNGEN CNFAHGMQDL RQPPPNWKEL 60 VGGGASSEED RSTATNREDD LRIIHKMKLC KKLYNGEECP YGDRCNFLHE DPANFREDTG 120 RFRESTAISI GTTGQLTGQG SGVFNAAEVN RPANTVVSDA SRSSLIKPVY WKTKLCTKWE 180 MTGQCPFGEK CHFAHGLAEL QIPGGRTEVE AGNADSTVTK TPTPVLPNNV SPSMSTVNVP 240 SLVEEKGTKC LLKWKGQKKI NRIYADWLDD LCH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1537s0010.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011014452.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X2
Swissprot	Q9LT81	9e-92	C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBL	A0A3N7EY47	0.0	A0A3N7EY47_POPTR; Uncharacterized protein
STRING	POPTR_0004s17670.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8333	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	1e-89	C3H family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.1537s0010.1.p