PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1496s0030.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Trihelix

Protein Properties

Length: 300aa MW: 35305.8 Da PI: 8.8068

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1496s0030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.8	9.1e-26	42	123	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W qe+++ i +r e+e+++ +k++k+lWe vs+kmre+g++r+p+qCk+kw+nl +ryk ++++ + + ++cp+f++l+ SapurV1A.1496s0030.1.p 42 QWGLQETKEFIGIRAELEKDFTVTKRNKTLWEIVSAKMREKGYRRTPEQCKCKWKNLVNRYKGKETSDPE----TGRQCPFFEELH 123 7************************************************************9999997....4678****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.224	35	99	IPR017877	Myb-like domain
Pfam	PF13837	7.9E-23	41	124	No hit	No description
CDD	cd12203	7.26E-23	43	106	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MMFSGGGEGD TGLGRINMMP TAAMLSPSAE VSPRGPPQQQ PQWGLQETKE FIGIRAELEK 60 DFTVTKRNKT LWEIVSAKMR EKGYRRTPEQ CKCKWKNLVN RYKGKETSDP ETGRQCPFFE 120 ELHAVFTERA KNMQRLFLES EAGSTQSRKK VKKTSGDRSS DEFSEEEDED DDDSEEEKPV 180 KSNSRKRKVE KIKVEKSPRA SSSTGGGIQE MLKEFLQQQQ KMEMQWREMM ERRSHERQLF 240 EQEWRQSMEK LERERLMIEQ AWRDREEQRR IREESRAERR DALLTTLLNK LIRENKIEN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1496s0030.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011018396.1	1e-156	PREDICTED: trihelix transcription factor GT-3b-like
TrEMBL	U5GMR3	1e-154	U5GMR3_POPTR; Uncharacterized protein
STRING	POPTR_0003s10360.1	1e-146	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1781	33	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	7e-33	Trihelix family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.1496s0030.1.p