PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1209s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family M-type_MADS
Protein Properties Length: 471aa    MW: 51004.4 Da    PI: 6.1181
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1209s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.22.5e-141151343
                            --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                  SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                            i n+s r  ++ kRr g+lKK +EL +LC++e+ vii+s++
  SapurV1A.1209s0030.1.p 11 IVNDSARRASLKKRRVGLLKKVSELTILCGVEAFVIIYSPD 51
                            7799***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.54149IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-19160IPR002100Transcription factor, MADS-box
CDDcd002661.51E-25285No hitNo description
SuperFamilySSF554555.76E-23294IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-6323IPR002100Transcription factor, MADS-box
PfamPF003198.2E-141152IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MTRKKVKLTW IVNDSARRAS LKKRRVGLLK KVSELTILCG VEAFVIIYSP DDPEPTVWPS  60
RPKVLQLLTR FQNMPDMERY KKMVNQETYL KERMGKLNEQ SWKHRKNNRE LEMAGLMQQV  120
HRDKGFDGLD HTQLCGLAWL VKEKRKEIRK RIGYLEQIPS LQLGAFPLGP FPFHYQDLDK  180
NDGGDDDGTS GQAGGEPRYG RTNPTDGGAS WDQWFTDNIN NPEDSVAGGS SARNDLGLPY  240
PFNFTGGGGP NIGFHPGHNG GDDNLIDVFG LGLPHSRNMG DIRGGHNFDL GQLPRENESL  300
RGSSSAGGNN FDPGLLLGSN MEGGNLGNSF DPWLPSDLGF NPGGNNSVEL NFDLGLHQGH  360
STGGNNFDLW LPHENNMGGD SAVMNHVDTW LARGDMGGEN LGLGLLPGSN LAGSSAAGNH  420
FHSRDGSGDG AGSASGSNSG LPGSFGAASS DHIEQPFDVT KSWPSNNFNP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLTWIVNDSARRASLKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1209s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2101320.0AC210132.1 Populus trichocarpa clone POP011-D09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308328.10.0glycine-rich cell wall structural protein 1
TrEMBLB9H9L60.0B9H9L6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s21630.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110141938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-30AGAMOUS-like 80