PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0985s0170.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 486aa    MW: 53808.7 Da    PI: 5.8585
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0985s0170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538.1e-1757101147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             r rWT+eE++++++a k++G   W++I +++g ++t+ q++s+ qk+
  SapurV1A.0985s0170.1.p  57 RERWTEEEHKKFIEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 101
                             78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.39E-1651105IPR009057Homeodomain-like
PROSITE profilePS5129421.73552106IPR017930Myb domain
TIGRFAMsTIGR015579.7E-1755104IPR006447Myb domain, plants
SMARTSM007171.6E-1356104IPR001005SANT/Myb domain
PfamPF002493.4E-1457100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-95797IPR009057Homeodomain-like
CDDcd001671.53E-1059102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MAIQMKDQCG GTQLNLDGIS LGDALNNTTG QQLKEQFSSW SDYSPKERKP YTITKQRERW  60
TEEEHKKFIE ALKLYGRAWR RIEEHVGTKT AVQIRSHAQK FFSKVVRESG GSSTSSVEPI  120
EIPPPRPKRK PTHPYPRKLA HSLEKELLIP EKSPRSSSLN FSISEQENQS PTSVLSAVGS  180
DALGSTDSDA PNRSLSPVSF GGGVQHADSS PDEDGSPSVA TASSVPDEQF PKVEKLDSYP  240
RENVSSEELV VVEETSTRSL KLFGRTVFVT ESHKPSSPNM GTSKLSPLEA AEEKLVRPLT  300
LNNVDTQFLS GNGEPTWRPL SHGSHGSLCF MQFQKENSSP AQNDPATLMP WWTSYGATSF  360
PHIPFHKQEP AMDNLDSKGD EVQDKEIPKE VSWTGSNSGP VSEGENVDKN MDAETESQFF  420
YKEKELSPIF ELNLGKNSAS SGSKVINEKC SKGFVPYKKR IAERDSQSST ISGEEREEQR  480
IRLCL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0985s0170.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455555.10.0protein REVEILLE 1 isoform X2
TrEMBLA0A2K2AR850.0A0A2K2AR85_POPTR; Uncharacterized protein
STRINGPOPTR_0004s07270.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.12e-66MYB_related family protein