PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0916s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 830aa    MW: 91351.4 Da    PI: 7.8383
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0916s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.85.8e-06130149525
                             --SGGGGTS--TTTTT-SS-S CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                             lC++f + G C++G+ C+F H
  SapurV1A.0916s0020.1.p 130 LCKDFVA-GRCRRGNHCQFLH 149
                             9******.************* PP
2zf-CCCH17.95.5e-06190208625
                             -SGGGGTS--TTTTT-SS-S CS
                 zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                             C +f++ G C++G++C++aH
  SapurV1A.0916s0020.1.p 190 CTDFLK-GNCRRGESCRYAH 208
                             9*****.************* PP
3zf-CCCH17.67e-06253273526
                             --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                             +C+ffa+ G C+ G  C+F+H 
  SapurV1A.0916s0020.1.p 253 PCKFFAA-GNCQNGKFCRFSHH 273
                             7**9999.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.6E-4125151IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892125152IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5127150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-6129153IPR000571Zinc finger, CCCH-type
SMARTSM003560.0056184210IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.042184211IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.394248275IPR000571Zinc finger, CCCH-type
SMARTSM003560.16250274IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-5251273IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    Send to blast
MSGRKRSSKW DLKEGSRMPF EDVEDNAWPG KAGIPFHDKE SRRDWLPPEA ADSTRSKWSA  60
MEPLPGRRGS RRDDNFSEGH SRTLKATYED ESYGTRMSPG LDERRQQSSR NSPKNEYKRL  120
RSRSGVSAQL CKDFVAGRCR RGNHCQFLHQ VTETCEDDWE GPRKTAASKY LISHDTKQYS  180
MGSGRSAICC TDFLKGNCRR GESCRYAHHG ASDPSGRGSA NEVIRERDND RRHRYASPER  240
HAERETRRAA DIPCKFFAAG NCQNGKFCRF SHHNQTLASP DKRSRDVRCP PSQNSDELEK  300
SWNGPKWSDS HTSDSAKLSE DKNEKLDAPD LRLSAHHMDD GWGCNPVEDK TRSNPPTNEL  360
VEINKKKAFQ WKTENSGDIT NVSEQRAPEN WFGDMEMSPD WNYRLQPSNH INKGSSPELH  420
EGSGRVHDTA AVIPPMSNET SSIQQGFNLK EVGGGALSHH DDSVTAKTAS SYINISATAL  480
ASQNFNKNGQ GSNASPIPNL NTAGQIQEGI LTNASRGGTT TNPQSQTLFQ ERTVINIPDT  540
GNPNAPHANL GIPAAQNMAS NGHLNQPTNL SASLVQLLAD GQQLPQLHAA HNSHDCTFAN  600
SESTVAVKPD SAATIQPNQA VEPLKQYDPI CDSIEHGKLN VYTNPPDKKL ELPSKSLSPS  660
ALAAAPNGSD SNKFCSEQES NEESSQLNQP APAASSEATK ENNGAGSGEG NKVQEQDKTA  720
QKNGPLENSD GDGKADESKK NKDAKGNRAF KFSLVEFVKD LLKPAWKEGQ MSKDAYKNIV  780
KKVVDKVTGT MHSASIPTTQ EKIEQYLSVS KPKLTKLVQA YAEKFQKDK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0916s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307020.30.0zinc finger CCCH domain-containing protein 38
TrEMBLA0A3N7F0G10.0A0A3N7F0G1_POPTR; Uncharacterized protein
STRINGPOPTR_0005s06240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.15e-17C3H family protein