PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0867s0130.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NAC

Protein Properties

Length: 398aa MW: 44764.9 Da PI: 6.5122

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0867s0130.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.6	1.9e-56	16	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lp+GfrFhPtdee++++yL++kv ++ + + +i evd++k+ePwdLp k+k +e+ewyfF++rd+ky+tg r+nrat+sgyWkatg SapurV1A.0867s0130.1.p 16 LPAGFRFHPTDEEIITHYLTEKVMKSGFCA-IAIGEVDLNKCEPWDLPDKAKMGENEWYFFCQRDRKYPTGMRTNRATESGYWKATG 101 799**********************888.78***********99999****************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 kdke+++ k+ lvg+kktLvfy+grapkgekt+Wvmheyrle SapurV1A.0867s0130.1.p 102 KDKEIYRGKNCLVGMKKTLVFYRGRAPKGEKTSWVMHEYRLE 143 ***99999**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-64	10	167	IPR003441	NAC domain
PROSITE profile	PS51005	58.702	16	167	IPR003441	NAC domain
Pfam	PF02365	2.4E-29	17	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MEEAVVVNTG DDQMNLPAGF RFHPTDEEII THYLTEKVMK SGFCAIAIGE VDLNKCEPWD 60 LPDKAKMGEN EWYFFCQRDR KYPTGMRTNR ATESGYWKAT GKDKEIYRGK NCLVGMKKTL 120 VFYRGRAPKG EKTSWVMHEY RLEGKFSYHS LPKVARDEWV VCRIFHKSTG VKKTSIHDLR 180 RMNSFGDDFL DYSSLPPLMD PPTYTSRPGT SSFSDADNNE FKAMTTSGSS DGNYLANSSM 240 LNNNQNFVRP LNTIYQTPNS SFHLQNPASN PLYSFQTNPN MPVHLHQGRN TSSFPNFQNS 300 TFGNNDQTLL RALATGEIYG ESSNLLEKQC KVEQFSSNQS MVSLSQDSTG LSTDVNTAAE 360 ISSVVSKQEI GSHNKFYDNL EGPLAGAIAD LDYLLNY*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MEEAVVVNTG DDQMNLPAGF RFHPTDEEII THYLTEKVMK SGFCAIAIGE VDLNKCEPWD  60
LPDKAKMGEN EWYFFCQRDR KYPTGMRTNR ATESGYWKAT GKDKEIYRGK NCLVGMKKTL  120
VFYRGRAPKG EKTSWVMHEY RLEGKFSYHS LPKVARDEWV VCRIFHKSTG VKKTSIHDLR  180
RMNSFGDDFL DYSSLPPLMD PPTYTSRPGT SSFSDADNNE FKAMTTSGSS DGNYLANSSM  240
LNNNQNFVRP LNTIYQTPNS SFHLQNPASN PLYSFQTNPN MPVHLHQGRN TSSFPNFQNS  300
TFGNNDQTLL RALATGEIYG ESSNLLEKQC KVEQFSSNQS MVSLSQDSTG LSTDVNTAAE  360
ISSVVSKQEI GSHNKFYDNL EGPLAGAIAD LDYLLNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-52	13	173	17	174	NAC domain-containing protein 19
3swm_B	2e-52	13	173	17	174	NAC domain-containing protein 19
3swm_C	2e-52	13	173	17	174	NAC domain-containing protein 19
3swm_D	2e-52	13	173	17	174	NAC domain-containing protein 19
3swp_A	2e-52	13	173	17	174	NAC domain-containing protein 19
3swp_B	2e-52	13	173	17	174	NAC domain-containing protein 19
3swp_C	2e-52	13	173	17	174	NAC domain-containing protein 19
3swp_D	2e-52	13	173	17	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0867s0130.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216771	1e-109	AC216771.1 Populus trichocarpa clone POP051-N07, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006375881.2	0.0	NAC domain-containing protein 87
Swissprot	Q9FK44	1e-109	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A2K1Y1E0	0.0	A0A2K1Y1E0_POPTR; Uncharacterized protein
STRING	POPTR_0013s05110.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	1e-112	Arabidopsis NAC domain containing protein 87

Link Out ? help Back to Top
Phytozome	SapurV1A.0867s0130.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]