PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0711s0090.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 491aa MW: 54737.7 Da PI: 8.5155 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.3 | 7.7e-20 | 122 | 212 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k l++s+v + ++ lp +f+++h ++ + t+tl de g+++++k+i k++ l++GW++F+ a++L egD++vF+l+g SapurV1A.0711s0090.1.p 122 FVKSLVRSHVASCFWMGLPGSFCRAHlPHV---DATVTLLDECGKEFKMKYIAYKTG----LSAGWRQFCVAHQLFEGDVLVFQLIG 201 89************************5333...569***************666665....9************************* PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 + +f +v v+r+ SapurV1A.0711s0090.1.p 202 SCTF--KVYVIRA 212 8888..8888775 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.1E-21 | 115 | 213 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-25 | 116 | 213 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.09E-26 | 120 | 211 | No hit | No description |
PROSITE profile | PS50863 | 12.985 | 122 | 213 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-17 | 122 | 212 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.0E-23 | 122 | 213 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 491 aa Download sequence Send to blast |
MSGRVKKEAE ETDLIKPQPF HEENRKYVED GDVILAQLAL SLSSSGKQKS PMETTAKRLK 60 IKRRYSDSKL KFVISGHAGK CACCRQNKAP VERSNTVGEV KSSALIRAEE VQSNLEPAFP 120 SFVKSLVRSH VASCFWMGLP GSFCRAHLPH VDATVTLLDE CGKEFKMKYI AYKTGLSAGW 180 RQFCVAHQLF EGDVLVFQLI GSCTFKVYVI RANDLTEVDG ALGLLNLDAQ IKQNIADNAG 240 RDTAACKSSK RKRPRSLPLA IVQKKNKKSG QPRSSVLQAG QPAEQSENDS EEVGSEVLEG 300 FKLSLPAVQF KDIKSFEDFN ILVDGLLLDS ELSEDIRNKY YKLCCSQNAF LHDNLIKGVN 360 LKLIAGIISE TVNIADAMRA CTLTTSRDEF GTWDKALKAS ELFGMNVGFL RTKLGLLLSL 420 AFDSEGAAKT RRYIEARLKR VQTEDEIRNL EAKLVELKET YERYGADVER LKSKAEDYEV 480 RFQEQVLAPW * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0711s0090.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011010190.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1 | ||||
TrEMBL | B9HHH5 | 0.0 | B9HHH5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s11170.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1007 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19184.1 | 1e-38 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0711s0090.1.p |