PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0711s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 209aa MW: 22513.5 Da PI: 4.9504 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.7 | 2.5e-17 | 120 | 168 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 +y+GVr+++ +g+W+AeI+dp + +r +lg+f ae+Aa+a++ +++ SapurV1A.0711s0020.1.p 120 KYRGVRQRP-WGKWAAEIWDPA----QgTRMWLGTFENAEDAARAYDMKNIEFR 168 8********.**********83....25*******************8776666 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.53E-22 | 120 | 179 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.3E-36 | 120 | 183 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-10 | 120 | 168 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.709 | 120 | 177 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-29 | 120 | 178 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.42E-30 | 121 | 179 | No hit | No description |
PRINTS | PR00367 | 2.7E-11 | 121 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 143 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 209 aa Download sequence Send to blast |
MEASSSSNLV QRLEQEHNAI VSALKHVISG GTDHGSTSGP IEYQDQQNIL AAAAADDDGN 60 AGERSNVIYV SDSETCLVCK LSTSQCLGCV YFSGGANDQG GGGNEDTREK KGKGKRRKNK 120 YRGVRQRPWG KWAAEIWDPA QGTRMWLGTF ENAEDAARAY DMKNIEFRGI RAITNFPLSD 180 YQVQETEQDN PNQTGEASSA GGETSGGR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-22 | 121 | 178 | 6 | 64 | ATERF1 |
3gcc_A | 8e-22 | 121 | 178 | 6 | 64 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0711s0020.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011043562.1 | 1e-102 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
TrEMBL | B9HHG6 | 6e-97 | B9HHG6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s11080.1 | 1e-97 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2962 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47520.1 | 2e-21 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0711s0020.1.p |