PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0680s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 289aa    MW: 31716.7 Da    PI: 8.6432
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0680s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.12.1e-17220254135
                    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                             C++C +  Tp+WR gp g+ktLCnaCG++y++ +l
  SapurV1A.0680s0040.1.p 220 CAHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 254
                             *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.9E-14214268IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.477214250IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-14215278No hitNo description
Gene3DG3DSA:3.30.50.101.1E-13218252IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.05E-10219266No hitNo description
PfamPF003204.1E-15220254IPR000679Zinc finger, GATA-type
PROSITE patternPS003440220245IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDICRNVTLS AEYHQQEKVL ASPPPCPKLA AAASTAATLP LDDLFSAQNT EVDFSLEWLS  60
VFVEDCLSST GNCLPAPTVE AQKPNTEDTP PKTWKQKPQD QEDPSPLKKP VIPGKSRSKR  120
RRLSGDKTRN PLTSWCSTSQ ALNNFSSSDP PLLQQTYWLA DSELIMPRKE DSSSTGMDSE  180
VREESRSDQG KAGAAAGSGG GRDRLKVVES SNGQQQPRRC AHCLAQRTPQ WRAGPLGPKT  240
LCNACGVRYK SGRLLPEYRP AKSPTFVSFL HSNSHKKVME MRMASDQW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118122KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0680s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011034353.11e-168PREDICTED: GATA transcription factor 5-like
TrEMBLA0A2K1Y1N91e-166A0A2K1Y1N9_POPTR; Uncharacterized protein
STRINGPOPTR_0013s05610.11e-169(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-34GATA transcription factor 4