PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0591s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 305aa    MW: 33951.1 Da    PI: 8.9787
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0591s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66.1e-181461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEde+l++++k +G g+W++ ++  g++R++k+c++rw +yl
  SapurV1A.0591s0010.1.p 14 KGAWTKEEDERLINYIKAHGEGCWRSLPKAAGLHRCGKSCRLRWINYL 61
                            79********************************************97 PP
2Myb_DNA-binding52.21.4e-1667111147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg+++  Edel+++++ +lG++ W++Ia++++ gRt++++k++w+++
  SapurV1A.0591s0010.1.p  67 RGNFSDGEDELIINLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111
                             89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-25564IPR009057Homeodomain-like
PROSITE profilePS5129418.916961IPR017930Myb domain
SuperFamilySSF466893.67E-2913108IPR009057Homeodomain-like
SMARTSM007177.9E-151363IPR001005SANT/Myb domain
PfamPF002491.2E-151461IPR001005SANT/Myb domain
CDDcd001679.50E-111661No hitNo description
PROSITE profilePS5129427.21662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2665116IPR009057Homeodomain-like
SMARTSM007171.0E-1566114IPR001005SANT/Myb domain
PfamPF002496.2E-1567111IPR001005SANT/Myb domain
CDDcd001671.99E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGRSPCCEKE HTNKGAWTKE EDERLINYIK AHGEGCWRSL PKAAGLHRCG KSCRLRWINY  60
LRPDLKRGNF SDGEDELIIN LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLFSRG  120
IDPQTHRPLK STTATSSSTT ATTNSTSSKN SNMCTKTSTR FHLEEQNYPF LQVQPELTMS  180
SMIKKENNSN IIKVGGSSTD SAEDSNSSSG VTTELEVYPD HKLVNLELSI GLPSQAPHSS  240
INNLKQAKQQ EQEEVATHQL FETSTTTSTT HVSVHKVACL CYKLGFKKSQ ACSSCDDMGK  300
KSKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27141167108B-MYB
1h8a_C2e-271311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0591s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384381.11e-176myb-related protein 308
SwissprotP813931e-89MYB08_ANTMA; Myb-related protein 308
TrEMBLB9N5A71e-175B9N5A7_POPTR; Uncharacterized protein
STRINGPOPTR_0004s14510.11e-176(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.13e-84myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]