PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0574s0200.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 359aa    MW: 39453.8 Da    PI: 9.9355
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0574s0200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix491.6e-1557140186
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                             +W++  v +L+ea+++++   +r+klk+++We+v++++      ++  ++++qCk+k+e+++kry+ + +++        s++p++ 
  SapurV1A.0574s0200.1.p  57 EWSEGAVSTLLEAYESKWILRNRAKLKGHDWEDVARHVssraNCTKSPKTQTQCKNKIESMKKRYRSESATADA------SSWPLYP 137
                             5*************************************854444555566679***************999986......4699999 PP

                trihelix  84 qle 86 
                             +l+
  SapurV1A.0574s0200.1.p 138 RLD 140
                             986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.0E-2055140No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDKETNQECP SLHPNNSTIF KEESARKILR GLGAAGVTVT GIGGGGGGGG DRLKRDEWSE  60
GAVSTLLEAY ESKWILRNRA KLKGHDWEDV ARHVSSRANC TKSPKTQTQC KNKIESMKKR  120
YRSESATADA SSWPLYPRLD LLLRGNSTAA AVISSPQHQQ PSIPASSNPP LILLREPALG  180
VPQPPPPSMT PPPPPPPPPP PPPPPQFVET ITPNSHGSNG VDHRGQKEDG VDAKLSDHVS  240
EKNDMDTDSS TPALYSDKKK IRSKKLKMRM EKRKCSKREE WEIADSIRWL AEVVVRSEQA  300
RMDTMREVEK MRIEAEAKRG EMDLKRTEIV ANTQLEIARL FAAGVGKGVD SSLRIGRN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257273KKKIRSKKLKMRMEKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0574s0200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2255730.0CU225573.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299199.20.0trihelix transcription factor ASIL1
TrEMBLB9GLZ40.0B9GLZ4_POPTR; Uncharacterized protein
STRINGPOPTR_0001s06580.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-103sequence-specific DNA binding transcription factors