PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0541s0070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 284aa    MW: 34100.7 Da    PI: 9.1454
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0541s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.12.6e-2442124186
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                             +W+ qe+++ + +r e++ ++ ++k++k lWe +s+km+e+g++rs++qCk+kw+nl +ryk ++++e +     ++++p++++l+
  SapurV1A.0541s0070.1.p  42 QWSIQETKEFLMIRAELDPTFMEKKRNKVLWEVISNKMKEKGYNRSAEQCKCKWKNLFTRYKGCETIEPEA---MRQQFPFYNELQ 124
                             7********************************************************************95...55689****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.007339101IPR001005SANT/Myb domain
CDDcd122031.80E-2241106No hitNo description
PfamPF138373.4E-2042125No hitNo description
PROSITE profilePS500907.3294399IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEGNLHHQHH HQHQLQQYQL QQQQQQQQHI SVNVEASDKF PQWSIQETKE FLMIRAELDP  60
TFMEKKRNKV LWEVISNKMK EKGYNRSAEQ CKCKWKNLFT RYKGCETIEP EAMRQQFPFY  120
NELQTIFTSR MQRMLRAEAE EAAATGLKKK AVKLSSDDED ENEEIIEGEK GGIRKKLKKG  180
KTTGGTSGSG SINSLKECLE DFTKQQMQME MQWREVFEAR ENERMMREME WRRTMNKLEN  240
DRIVMERRWR EREEQRRVRE EARAERRDAL ITALLNKLRR EEI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0541s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322985.11e-144trihelix transcription factor GT-3b
RefseqXP_024443147.11e-144trihelix transcription factor GT-3b
SwissprotQ9SDW08e-69TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLB9IGA41e-143B9IGA4_POPTR; Uncharacterized protein
STRINGPOPTR_0016s12470.11e-143(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17813385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.11e-50Trihelix family protein