PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0533s0230.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 318aa    MW: 34958.5 Da    PI: 6.3954
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0533s0230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEdellv ++k+ G g+W++ ++  g+ R++k+c++rw +yl
  SapurV1A.0533s0230.1.p 14 KGAWTPEEDELLVSYIKKNGHGSWRSLPELAGLLRCGKSCRLRWTNYL 61
                            79******************************99************97 PP
2Myb_DNA-binding45.12.3e-1468112248
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              ++T eE++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
  SapurV1A.0533s0230.1.p  68 HPFTLEEEKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 112
                             589******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-23564IPR009057Homeodomain-like
PROSITE profilePS5129424.094965IPR017930Myb domain
SuperFamilySSF466896.74E-3011108IPR009057Homeodomain-like
SMARTSM007171.7E-131363IPR001005SANT/Myb domain
PfamPF002494.2E-161461IPR001005SANT/Myb domain
CDDcd001673.36E-111661No hitNo description
Gene3DG3DSA:1.10.10.602.4E-2465116IPR009057Homeodomain-like
SMARTSM007172.5E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129418.34666116IPR017930Myb domain
PfamPF002493.6E-1368112IPR001005SANT/Myb domain
CDDcd001674.64E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGRTPCCDKN GLKKGAWTPE EDELLVSYIK KNGHGSWRSL PELAGLLRCG KSCRLRWTNY  60
LRPDIKRHPF TLEEEKLVIQ LHGILGNRWA AIASQLPGRT DNEIKNLWNT HLKKRLLCMG  120
LDPQTHEPFT SRGPAIKGPA SPATRHMTQW EGARLEAEAR LSRESSLFHP PIPGKLDCDY  180
FLRLWNSEVG QSFRRINMGD VVKTACPSPV SQASSSTKCG SISAITADIS PSFAGPSAAE  240
NNQNEDMECK SCRSDAEDVM AGPDSLSSAE SEDSTDSTLQ LLLDFPINND MSFLEGNIES  300
YATTSGMLTG NSMIFPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0533s0230.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347211e-39KM034721.1 Jatropha curcas clone JcMYB101 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320117.10.0transcription factor MYB41
SwissprotQ9M2D91e-129MYB17_ARATH; Transcription factor MYB17
TrEMBLB9I8G70.0B9I8G7_POPTR; Uncharacterized protein
STRINGPOPTR_0014s07700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-122myb domain protein 17