PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0525s0230.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB | ||||||||
Protein Properties | Length: 250aa MW: 27475.5 Da PI: 7.5625 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.8 | 1.2e-18 | 37 | 82 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v+q+G ++W++I+r++ gR++k+c++rw + SapurV1A.0525s0230.1.p 37 KGPWSAEEDRVLTRLVEQHGARNWSLISRYIK-GRSGKSCRLRWCNQ 82 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3e-16 | 91 | 133 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ SapurV1A.0525s0230.1.p 91 PFSPIEDETILAAHARFGNR-WATIARLLP-GRTDNAVKNHWNST 133 79999***************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.927 | 32 | 87 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.47E-31 | 35 | 130 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-16 | 36 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-17 | 37 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-24 | 38 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.94E-15 | 39 | 81 | No hit | No description |
SMART | SM00717 | 1.7E-14 | 88 | 136 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.078 | 89 | 138 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-22 | 91 | 137 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.81E-11 | 91 | 134 | No hit | No description |
Pfam | PF00249 | 2.5E-13 | 91 | 133 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MEAMNMCSTS SSDSSSSDSS FNGNKAPRST IKSERIKGPW SAEEDRVLTR LVEQHGARNW 60 SLISRYIKGR SGKSCRLRWC NQLSPNVEHR PFSPIEDETI LAAHARFGNR WATIARLLPG 120 RTDNAVKNHW NSTLKRRARE RQSQMNLEGN FDSNYGNNNN EGIAIDINVA SGSMSDGIMR 180 EEEDALTTLT LAPPGIGGGV GDNSGGMVVA ERRPEGLPAG FWDVMRDVIA REVRDYVSST 240 LSESTSGFH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-39 | 34 | 138 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0525s0230.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006374997.1 | 1e-148 | transcription factor MYB77 | ||||
TrEMBL | B9MVK3 | 1e-147 | B9MVK3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s13030.1 | 1e-134 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5074 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 3e-57 | myb domain protein 73 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0525s0230.1.p |