PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0445s0160.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | Trihelix | ||||||||
Protein Properties | Length: 457aa MW: 51142 Da PI: 5.913 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 66 | 7.9e-21 | 123 | 219 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tses 75 +Wt++ v++Li+++ ++++ ++ +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++e+ +++ ++++ SapurV1A.0445s0160.1.p 123 KWTDNIVRLLIAVVACVGDDGTLDAveglkrksgllQKKGKWKMVSKLMISKGCHVSPQQCEDKFNDLNKRYKRLNEILGRGtSCRV 209 7**************666666644333455556788**********************************************56999 PP trihelix 76 sstcpyfdql 85 +++ ++ d++ SapurV1A.0445s0160.1.p 210 VENPVLMDSM 219 9998888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.9E-18 | 121 | 246 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence Send to blast |
MDNSGLGGRF LSGPSGGLLD LESPIHRHQQ SQLGHPSLAH QHQVNIVGCF DNDHQPIGLT 60 EVKGSTSKVY SANFGKGKAV SPFNCASSGN ASEDDDQSFM EDGNGENSTG VKGKKGSPWQ 120 RMKWTDNIVR LLIAVVACVG DDGTLDAVEG LKRKSGLLQK KGKWKMVSKL MISKGCHVSP 180 QQCEDKFNDL NKRYKRLNEI LGRGTSCRVV ENPVLMDSMP HLSAKAKDDV RKILGSKHLF 240 YKEMCAYHNG QRIPNCQDLD LHGCSLPLER CSKDNNGSGE DEAEGNGDSD DDESDNEENN 300 NGDEDGDRER VGHLCEGQVN DEHAHLWSQP GGRNSFDVEM AEIFQDPAVS PWERKEWIKK 360 QMLQLLEQRV SIQAQAFELE KQRFKWLRYC SKKDKEFERS RLENERRKLE NEQSALQLRQ 420 KQLEMDFKSS EPSFDPACLG IDGLQGRDPI DLSRPQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0445s0160.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216413 | 0.0 | AC216413.1 Populus trichocarpa clone POP035-J17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024451426.1 | 0.0 | uncharacterized protein LOC7487031 | ||||
TrEMBL | A0A2K2BR19 | 0.0 | A0A2K2BR19_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s05670.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10546 | 32 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 7e-66 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0445s0160.1.p |