PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0435s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family M-type_MADS
Protein Properties Length: 83aa    MW: 9567.49 Da    PI: 10.698
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0435s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF529.1e-171653845
                            HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                  SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                             rq  +skR+ g+lKKA+EL +LCd++ a+++fs+t k
  SapurV1A.0435s0010.1.p 16 ARQAKYSKRKIGLLKKAKELVILCDIDLALVMFSPTKK 53
                            69999******************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.7E-21160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.025161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.46E-21278IPR002100Transcription factor, MADS-box
CDDcd001209.07E-18254No hitNo description
PRINTSPR004041.1E-14323IPR002100Transcription factor, MADS-box
PfamPF003192.7E-171455IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-143859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MGRRKLKIQR LECVKARQAK YSKRKIGLLK KAKELVILCD IDLALVMFSP TKKPSLYVGQ  60
DKDLSIVLER MSTLSFEERE QR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0435s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022754147.17e-40agamous-like MADS-box protein AGL65
SwissprotQ7X9I03e-20AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLB9IKF02e-43B9IKF0_POPTR; Uncharacterized protein
STRINGPOPTR_0018s08400.13e-44(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2051955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26320.14e-26AGAMOUS-like 33
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]