PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0389s0330.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ARF | ||||||||
Protein Properties | Length: 880aa MW: 96324.2 Da PI: 5.7394 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.8 | 1.2e-24 | 147 | 248 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+k+lt sd++++g +++p++ ae+ ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++Lk+gD+v SapurV1A.0389s0330.1.p 147 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSV 231 99*********************999*****954444.4.38********************************************* PP EEEE-SSSEE..EEEEE-S CS B3 81 vFkldgrsefelvvkvfrk 99 +F ++++ +l+v+v+r+ SapurV1A.0389s0330.1.p 232 LFI--RDEKSQLMVGVRRA 248 ***..4577778*****97 PP | |||||||
2 | Auxin_resp | 111.1 | 1.1e-36 | 273 | 356 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++++s+F+++YnPra++s+Fv+++ k++ka+ ++vsvGmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+ SapurV1A.0389s0330.1.p 273 AAHATANRSPFTIFYNPRACPSDFVIPLIKFRKAVFgTQVSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 356 79********************************988*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.83E-46 | 134 | 276 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-41 | 141 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.90E-23 | 146 | 247 | No hit | No description |
SMART | SM01019 | 1.8E-25 | 147 | 249 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-22 | 147 | 248 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.253 | 147 | 249 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.1E-31 | 273 | 356 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 14.85 | 828 | 879 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 880 aa Download sequence Send to blast |
MGSVEEKMKT GVLVNGAQAN LLEEMKLLKE FQDQSGIRKA INSELWYACA GPLVSLPQVG 60 SLVYYFPQGH SEQVAVSTRR SATSQIPNYP NLPSQLLCQV HNVTQHADKD TDEIYAQMSL 120 QPVNSEKDVF PIPDFGLKPS KHPSDFFCKT LTASDTSTHG GFSVPRRAAE KLFPPLDYTM 180 QPPTQELVVR DLHDNTWTFR HIYRGQPKRH LLTTGWSLFV GSKRLKAGDS VLFIRDEKSQ 240 LMVGVRRANR QQTTLPSSVL SADSMHIGVL AAAAHATANR SPFTIFYNPR ACPSDFVIPL 300 IKFRKAVFGT QVSVGMRFGM MFETEESGKR RYMGTIVGIS DLDPLRWPGS KWRNLQVEWD 360 EPGCSDKQNR VSSWEIETPE SLFIFPSLTS GLKRPLQSGF LGDTEWGSLV KRPLSWLPGS 420 GNGNLPYASM SNMCSEQLIN MLMKPHPINY PGICGTAPPE VSATKVTSID VKNMQATNNQ 480 MPQLNQPGVT SLENQNYSQI CLDQSDAINS SSSKINVAGK SFAASEIENQ TSVGVSEGNL 540 KAESHLPDQL SQLTSTGECD VQKALLCPLT QQNATNHLEF QNQNQGHSQL QSSLWPTQSL 600 PESSLLNSQQ IHAPLADATA LNCSLPFLDA DEWISHPMSL AGMYRSGPLS MFGLQDPSVV 660 FPEAINPSLP FMNQDVWDHQ ISNSRILSQA NQLIPLTQKD PCSLNSGAVK DLSDESNDQS 720 GIYGSLNIDA SNGGGSVVDP SVSSAIIDEF CTLKGADLQN ASDCLVGNLS SSQDVQSQIT 780 SASLADSQAF SRQDFPDNSG GTSSSNIDFD NSNLLQNSSW QQVAPRVRTY TKVQKTGSVG 840 RSIDVSRFKN YEELCSAIEC MFGLDGLLNN PKRSGWKLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 381 | 5 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0389s0330.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024457113.1 | 0.0 | auxin response factor 5 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A1L6K4C2 | 0.0 | A0A1L6K4C2_POPTO; Auxin response factor | ||||
STRING | POPTR_0005s25800.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8991 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0389s0330.1.p |