PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0346s0160.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NAC

Protein Properties

Length: 349aa MW: 39091.5 Da PI: 8.9138

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0346s0160.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.1	1.1e-55	17	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhPtdeel+++yL kkv + ++++ ++i +vd++k+ePw+Lp k++ +ekewyfF+ rd+ky+tg r+nrat++gyWkatg SapurV1A.0346s0160.1.p 17 LPPGFRFHPTDEELISHYLYKKVLDITFSA-KAIGDVDLNKSEPWELPWKANMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATG 102 79************************99.88***********888999***************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 kdke+++ ++ lvg+kktLvfykgrapkgekt+Wvmheyrl SapurV1A.0346s0160.1.p 103 KDKEIYR-GKFLVGMKKTLVFYKGRAPKGEKTNWVMHEYRL 142 ***.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.45E-64	13	167	IPR003441	NAC domain
PROSITE profile	PS51005	59.423	17	167	IPR003441	NAC domain
Pfam	PF02365	2.1E-29	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MENISGRGKE GDGQMDLPPG FRFHPTDEEL ISHYLYKKVL DITFSAKAIG DVDLNKSEPW 60 ELPWKANMGE KEWYFFCVRD RKYPTGLRTN RATEAGYWKA TGKDKEIYRG KFLVGMKKTL 120 VFYKGRAPKG EKTNWVMHEY RLDGRFSVHN LPKTAKNEWV ICRVFQKSSA GKKTHISGLA 180 RLGSFSNELG PSGLPPLMDS PPCNGKIKPV AESVYVPCFS NPINVQRNQQ DTIDSFNNHL 240 LAASANPLEV FPRIPLLNPF CTTQAVPASG NLQYPGSVLM QDHSVLRALI SNQGTNMKQQ 300 SFKTERDLNA EISSVISNLE VGKRSSDDLD GTPSTLVPSM DLDCFWSY*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MENISGRGKE GDGQMDLPPG FRFHPTDEEL ISHYLYKKVL DITFSAKAIG DVDLNKSEPW  60
ELPWKANMGE KEWYFFCVRD RKYPTGLRTN RATEAGYWKA TGKDKEIYRG KFLVGMKKTL  120
VFYKGRAPKG EKTNWVMHEY RLDGRFSVHN LPKTAKNEWV ICRVFQKSSA GKKTHISGLA  180
RLGSFSNELG PSGLPPLMDS PPCNGKIKPV AESVYVPCFS NPINVQRNQQ DTIDSFNNHL  240
LAASANPLEV FPRIPLLNPF CTTQAVPASG NLQYPGSVLM QDHSVLRALI SNQGTNMKQQ  300
SFKTERDLNA EISSVISNLE VGKRSSDDLD GTPSTLVPSM DLDCFWSY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-54	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-54	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-54	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-54	14	173	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-54	14	173	17	174	NAC domain-containing protein 19
3swm_B	2e-54	14	173	17	174	NAC domain-containing protein 19
3swm_C	2e-54	14	173	17	174	NAC domain-containing protein 19
3swm_D	2e-54	14	173	17	174	NAC domain-containing protein 19
3swp_A	2e-54	14	173	17	174	NAC domain-containing protein 19
3swp_B	2e-54	14	173	17	174	NAC domain-containing protein 19
3swp_C	2e-54	14	173	17	174	NAC domain-containing protein 19
3swp_D	2e-54	14	173	17	174	NAC domain-containing protein 19
4dul_A	2e-54	14	173	14	171	NAC domain-containing protein 19
4dul_B	2e-54	14	173	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0346s0160.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002321447.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-147	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	B9IDX4	0.0	B9IDX4_POPTR; Uncharacterized protein
STRING	POPTR_0015s02170.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-149	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	SapurV1A.0346s0160.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]