PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0339s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 331aa    MW: 35657.8 Da    PI: 8.4893
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0339s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.34.9e-201257147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                            +g+W++eEde l ++v+++G+++W++I++ ++ gR++k+c++rw + 
  SapurV1A.0339s0020.1.p 12 KGPWSPEEDEALQKLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57
                            79******************************.***********985 PP
2Myb_DNA-binding54.23.4e-1766108347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             ++T+eEd+ +++a++++G++ W+tI+r ++ gRt++ +k++w++ 
  SapurV1A.0339s0020.1.p  66 AFTPEEDDTIIRAHARFGNK-WATISRLLN-GRTDNAIKNHWNST 108
                             79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.097762IPR017930Myb domain
SuperFamilySSF466891.91E-329105IPR009057Homeodomain-like
SMARTSM007176.4E-181160IPR001005SANT/Myb domain
PfamPF002491.5E-191257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-261365IPR009057Homeodomain-like
CDDcd001674.60E-171456No hitNo description
SMARTSM007172.2E-1463111IPR001005SANT/Myb domain
PROSITE profilePS5129420.4664113IPR017930Myb domain
PfamPF002495.8E-1566108IPR001005SANT/Myb domain
CDDcd001671.45E-1166109No hitNo description
Gene3DG3DSA:1.10.10.608.4E-2366112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSITRKEMER IKGPWSPEED EALQKLVQKH GPRNWSLISK SIPGRSGKSC RLRWCNQLSP  60
QVEHRAFTPE EDDTIIRAHA RFGNKWATIS RLLNGRTDNA IKNHWNSTLK RKCSSLADDG  120
NFSNREGYDG NMDVDDAQPS KRSVSAGSGV PVFTGLHMSP GSPSGSDVSD SSLPGLSSSS  180
FNHNIYRPVA RTGGVLPPVE TTSSSENNND DPPTSLSLSL PGADPATKVP NRVVESTQQP  240
KPNSVTPFLL AADPAQTTPG VAGQTGHAGC GFVGFSRELM TVMQEMIRRE VRNYMMEQSG  300
GVGGGMCYQG MSGEGFRNVA VNRVGVGKIE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-4291121104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0339s0020.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306488.30.0transcription factor MYB44
SwissprotO231601e-108MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A2K2AGN80.0A0A2K2AGN8_POPTR; Uncharacterized protein
STRINGPOPTR_0005s18620.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-98myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]