PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0308s0200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GATA | ||||||||
Protein Properties | Length: 254aa MW: 28230.5 Da PI: 7.9962 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54 | 2.3e-17 | 187 | 221 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + Tp+WR gp g+ktLCnaCG++y++ +l SapurV1A.0308s0200.1.p 187 CTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 221 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.50.10 | 6.5E-14 | 180 | 218 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.596 | 181 | 217 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 5.1E-14 | 181 | 235 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.23E-15 | 182 | 245 | No hit | No description |
CDD | cd00202 | 4.10E-11 | 186 | 233 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 187 | 212 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.7E-15 | 187 | 221 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MDFCRNVTVS KLTAAAASKS PLDDLFSAQN TEVDFSMEWL TVFVEDCLSS TGICLPPPTS 60 DSQKTNTEET PPKPSQQKPQ DQENPSSSKK SVIPGRARSK RRRINGDRSR NPLTSWCNTN 120 QALNLPFSDP PLLQQTHWLA DSELIMPVKD GEVQEKSGVE DDGEDEEGKE SSGRLGSHND 180 QQQPRRCTHC LAQRTPQWRA GPLGPKTLCN ACGVRYKSGR LLPEYRPAKS PTFVSYLHSN 240 SHKKVMEMRM NSN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 99 | 103 | KRRRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0308s0200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002325826.3 | 1e-146 | GATA transcription factor 2 | ||||
TrEMBL | A0A2K1WNU6 | 1e-144 | A0A2K1WNU6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s04860.1 | 1e-146 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8487 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60530.1 | 2e-35 | GATA transcription factor 4 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0308s0200.1.p |