PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0277s0120.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB | ||||||||
Protein Properties | Length: 320aa MW: 36190.5 Da PI: 9.141 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 6.9e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l d+++ +G g+W++ ++ g+ R++k+c++rw +yl SapurV1A.0277s0120.1.p 14 KGAWTKEEDQRLMDYIRVHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 56 | 9.3e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eEde +++++ +lG++ W++Ia +++ gRt++++k++w+++ SapurV1A.0277s0120.1.p 67 RGNFTDEEDEVIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.402 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.47E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.45E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.536 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-28 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.05E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MGRSPCCEKE HTNKGAWTKE EDQRLMDYIR VHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TDEEDEVIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLISRG 120 IDPQTHRPLN EKTAAAAATT TSNTTATIKT TTSSAAAAKV THLEFKNTPP QSLAEISLLK 180 SQLDFKHNNF HSSQYSSFNP KKTETPSAEE NNCTSSSMTT DEEQQQKQQK RESHQNQDVN 240 LDLTIGLAPA KTFSPNSAES RLQQPVSSSC HLFGSVLTRP GCLCWQMDGE RRELCRNCQN 300 QNQSSKSNHN NNGLYYRYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-28 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0277s0120.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011001099.1 | 0.0 | PREDICTED: transcription repressor MYB6 | ||||
Swissprot | Q38851 | 1e-90 | MYB6_ARATH; Transcription repressor MYB6 | ||||
TrEMBL | A0A2K1Y445 | 1e-176 | A0A2K1Y445_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s11360.1 | 1e-176 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 1e-89 | myb domain protein 6 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0277s0120.1.p |