PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0173s0300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 217aa MW: 25184.4 Da PI: 10.3721 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80 | 1.6e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie k+ rq+tfskRrng++KKA LSvLCd++ a+++fsstgklye+s+ SapurV1A.0173s0300.1.p 9 KRIEKKICRQITFSKRRNGLIKKARDLSVLCDVQLALLVFSSTGKLYEFST 59 79***********************************************96 PP | |||||||
2 | K-box | 31.8 | 5.9e-12 | 98 | 161 | 24 | 87 |
K-box 24 LkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 k+ e Lq R + + e+L+l +L+q e q++ +l++ R++K++l+le+++ l +k +l SapurV1A.0173s0300.1.p 98 FKSCAELLQIVRRSFEDSNFEELTLSDLEQTEMQIDAALRHTRARKMQLMLESMNALHEKVWSL 161 5666788999999999999*************************************99997665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.562 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.7E-34 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.49E-27 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.28E-32 | 2 | 73 | No hit | No description |
PRINTS | PR00404 | 3.9E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.1E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 7.45 | 87 | 179 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 9.2E-9 | 99 | 161 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MGRKKVELKR IEKKICRQIT FSKRRNGLIK KARDLSVLCD VQLALLVFSS TGKLYEFSTA 60 GSVAKILKRR RSHFEEKTAL SSGANDAELY HGKYEKTFKS CAELLQIVRR SFEDSNFEEL 120 TLSDLEQTEM QIDAALRHTR ARKMQLMLES MNALHEKVWS LFLYQTLLRN YQYSVITVSP 180 FKFRGKRKGN EKLIFTVSRN LYDIIPIVPL DYALFI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-16 | 1 | 68 | 1 | 68 | MEF2C |
5f28_B | 8e-16 | 1 | 68 | 1 | 68 | MEF2C |
5f28_C | 8e-16 | 1 | 68 | 1 | 68 | MEF2C |
5f28_D | 8e-16 | 1 | 68 | 1 | 68 | MEF2C |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 72 | KRRRSH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0173s0300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024452186.1 | 4e-91 | MADS-box transcription factor 14 isoform X2 | ||||
TrEMBL | A0A2K2B8F0 | 9e-88 | A0A2K2B8F0_POPTR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14472 | 4 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26310.1 | 1e-38 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0173s0300.1.p |