PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0167s0310.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 306aa    MW: 33190.3 Da    PI: 9.2825
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0167s0310.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.6e-191257147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                            +g+W++eEde l ++v+ +G+++W++I++ ++ gR++k+c++rw + 
  SapurV1A.0167s0310.1.p 12 KGPWSPEEDEALQRLVQTYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57
                            79******************************.***********985 PP
2Myb_DNA-binding51.32.7e-1666108347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             +++++Ed  +++a++++G++ W+tIar ++ gRt++ +k++w++ 
  SapurV1A.0167s0310.1.p  66 PFSADEDNAIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 108
                             79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.929762IPR017930Myb domain
SuperFamilySSF466891.16E-319105IPR009057Homeodomain-like
SMARTSM007172.6E-171160IPR001005SANT/Myb domain
PfamPF002491.6E-181257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-251365IPR009057Homeodomain-like
CDDcd001671.37E-161456No hitNo description
SMARTSM007173.0E-1463111IPR001005SANT/Myb domain
PROSITE profilePS5129420.16664113IPR017930Myb domain
CDDcd001679.80E-1266109No hitNo description
Gene3DG3DSA:1.10.10.602.9E-2266112IPR009057Homeodomain-like
PfamPF002496.8E-1466108IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MASTRKDVDR IKGPWSPEED EALQRLVQTY GPRNWSLISK SIPGRSGKSC RLRWCNQLSP  60
EVEHRPFSAD EDNAIIRAHA RFGNKWATIA RLLNGRTDNA IKNHWNSTLK RKCSSMSEDL  120
NDDAQQQPLK RSASLGAGSG LYLNPSSPSG SDLSDSSVPG VNSSPVYRPL ARSGSLAPPR  180
LSINVSSPTA DPPTSLCLSL PGSNTCESPG SGSLSHASNQ TQTPVAPLPA AVTVQQQQQI  240
AVAQRNVEFG YEKQFFRSEF LAVMQEMIRK EVRSYMSGIE QNGLCLGTEA IGNAVVKRIG  300
ISRIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-41111133105C-Myb DNA-Binding Domain
1msf_C5e-41111133105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0167s0310.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0297700.0CT029770.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451715.10.0transcription factor MYB44
SwissprotO231609e-94MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A2K2BHP50.0A0A2K2BHP5_POPTR; Uncharacterized protein
STRINGPOPTR_0002s12410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.18e-86myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]