PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0158s0480.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 759aa MW: 86678.7 Da PI: 6.3312

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0158s0480.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.8	2.3e-20	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtklel 83 +fY+++Ak++GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w++t +++ SapurV1A.0158s0480.1.p 62 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQIKASDDGKLQRNRKSSRCGCQAYMRIVKRAdfdVPEWRITGFSN 148 6*************999887455667****************9***************98887676789**** PP FAR1 84 eHnHela 90 HnHel SapurV1A.0158s0480.1.p 149 IHNHELL 155 ***96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-17	62	155	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.6E-25	278	369	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.619	540	588	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.1E-8	561	586	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.1E-6	563	590	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 759 aa Download sequence Send to blast
METMSRLTNV VKETSESGMD SCPDDIGTVE EVPEDTILSR QTSVNLVPFI GQRFVSQDAA 60 YEFYCSFAKQ CGFSIRRHRT RGKDGVGRGI TRRDFTCHRG GYPQIKASDD GKLQRNRKSS 120 RCGCQAYMRI VKRADFDVPE WRITGFSNIH NHELLKSNEV QLLPAYCTMS ADEKSRICMY 180 AKAGMSVRQM LRLMELEKGV KLGCLPFTEI DVRNLLQSFR NVNRDNDAID LLEMCKHKKD 240 NDPNFKYNFH IDANKRLEQI AWSYASSIQS YEAFGDSIIF DTTHRLDAYD MILGIWIGVD 300 NHGTNCFFGC VLLRDENMES FSWALKTFLE FMDGKAPETI LTDQNMWLKE AISVEMPRTK 360 HAFCIWHIIA KFSDWFSVPL GSQYDKWKAE FLRLYGLQSV EDFEVGWRDM VDAYGVHGNK 420 HIISLFALRT FWALPYLRCY FFAGMTSTFQ SESINAYIQR VLSAQSLDNF VEQVAAAVEF 480 KEPGPRQKMQ RKVHKISLKT GSPIESHAAT VLTPYAFSKL QEELVLAPQY ASLMVDETYF 540 IVRIHTDMDG GCKVIWIPHD EFISCSCCLF EFSGILCRHV LRVLSTNNCF HIPDRYLPVR 600 WRDVSTSLTK PFQTFTSEEH AEKVQLLQSI VSTLLTESIE TEERLDVACD QVDEVLTRIK 660 EFPRAGHGCN DIGYNSPSDS LILPEVEDSD GFVHGFTDGN CHEITLGKMK ERRLRDGMNT 720 FRKRRRCSVP CCGQYGHDAT DCPMMEGGDL NGDGLGFL*

Sequence ? help Back to Top

Protein Sequence Length: 759 aa Download sequence Send to blast

METMSRLTNV VKETSESGMD SCPDDIGTVE EVPEDTILSR QTSVNLVPFI GQRFVSQDAA  60
YEFYCSFAKQ CGFSIRRHRT RGKDGVGRGI TRRDFTCHRG GYPQIKASDD GKLQRNRKSS  120
RCGCQAYMRI VKRADFDVPE WRITGFSNIH NHELLKSNEV QLLPAYCTMS ADEKSRICMY  180
AKAGMSVRQM LRLMELEKGV KLGCLPFTEI DVRNLLQSFR NVNRDNDAID LLEMCKHKKD  240
NDPNFKYNFH IDANKRLEQI AWSYASSIQS YEAFGDSIIF DTTHRLDAYD MILGIWIGVD  300
NHGTNCFFGC VLLRDENMES FSWALKTFLE FMDGKAPETI LTDQNMWLKE AISVEMPRTK  360
HAFCIWHIIA KFSDWFSVPL GSQYDKWKAE FLRLYGLQSV EDFEVGWRDM VDAYGVHGNK  420
HIISLFALRT FWALPYLRCY FFAGMTSTFQ SESINAYIQR VLSAQSLDNF VEQVAAAVEF  480
KEPGPRQKMQ RKVHKISLKT GSPIESHAAT VLTPYAFSKL QEELVLAPQY ASLMVDETYF  540
IVRIHTDMDG GCKVIWIPHD EFISCSCCLF EFSGILCRHV LRVLSTNNCF HIPDRYLPVR  600
WRDVSTSLTK PFQTFTSEEH AEKVQLLQSI VSTLLTESIE TEERLDVACD QVDEVLTRIK  660
EFPRAGHGCN DIGYNSPSDS LILPEVEDSD GFVHGFTDGN CHEITLGKMK ERRLRDGMNT  720
FRKRRRCSVP CCGQYGHDAT DCPMMEGGDL NGDGLGFL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	721	725	RKRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0158s0480.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011042203.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
Refseq	XP_011042204.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	B9GSF4	0.0	B9GSF4_POPTR; Uncharacterized protein
STRING	POPTR_0002s20030.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	SapurV1A.0158s0480.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]