PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0130s0360.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 229aa MW: 25855.5 Da PI: 8.011 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53 | 7.7e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEde+lv ++ +G g+W++ ++ g+ R++k+c++rw +yl SapurV1A.0130s0360.1.p 14 KGAWTREEDERLVAHIQAHGEGCWRSLPKSAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54.4 | 2.9e-17 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+ Edel+++++ ++G++ W++Ia +++ gRt++++k++w++ SapurV1A.0130s0360.1.p 67 RGNFTEKEDELIIKLHSLFGNK-WSLIAGRLP-GRTDNEIKNYWNT 110 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.675 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.43E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.27E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.517 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-27 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.30E-12 | 69 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTRE EDERLVAHIQ AHGEGCWRSL PKSAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEKEDELIIK LHSLFGNKWS LIAGRLPGRT DNEIKNYWNT RIKRKLLSRG 120 FDPLTHRPIN ESAIDDMTTS LGAVLEEEEI TSGFGCKNLK NPDGEKCQEL NLELRICPPY 180 QHPPHSMDGM GRNIPCFYCI LGLKNSKDCS CGSDSDDFLA MKNGALDY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-29 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0130s0360.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006383085.2 | 1e-149 | myb-related protein 308 | ||||
Swissprot | P81393 | 1e-99 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A2K2AF67 | 1e-148 | A0A2K2AF67_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s11410.1 | 1e-145 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38620.1 | 2e-90 | myb domain protein 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0130s0360.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|