PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0111s0230.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 746aa    MW: 80997.7 Da    PI: 7.1832
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0111s0230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-07319339526
                             --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                             +C++f++ G C++Gd C +aHg
  SapurV1A.0111s0230.1.p 319 PCPDFRK-GACRRGDMCEYAHG 339
                             8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.66E-1837164IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-1937193IPR020683Ankyrin repeat-containing domain
SMARTSM002487003868IPR002110Ankyrin repeat
PfamPF127964.1E-1177151IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.685160IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.1185108IPR002110Ankyrin repeat
SMARTSM002485.7E-585115IPR002110Ankyrin repeat
CDDcd002047.64E-1687165No hitNo description
SMARTSM002480.0025120152IPR002110Ankyrin repeat
PROSITE profilePS5008811.22120155IPR002110Ankyrin repeat
SMARTSM003564.0E-6314340IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-5319339IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582319341IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4319341IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4347377IPR000571Zinc finger, CCCH-type
SMARTSM0035624349372IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.183349373IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MCGGPEQSAK SSSTSTRYTV GATQITKDMN SLTVETEDTF SSLLELAANN DAEGFKRFIQ  60
RDASSINEAG FWYGRQKGSK QIVLDQRTPL MVAATYGSLD VLKLLLDHTK ADVNLSCGKE  120
KTTALHCAAS GGSINVVDVV KLLLSAGADP SCLDVNGDRP GDVVVVPPKL QSMKAALEDL  180
LSKTDSNGSA AEHDFNGSAV VSNLRVSISN SNFSSPTLSS SPENGSPPSP SVLIYSPRAA  240
KFNNMPGSCT PERREYPIDP SLPDIKNSIY ATDEFRMFSF KVRPCSRAYS HDWTECPFVH  300
PGENARRRDP RKFHYSCVPC PDFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS  360
CNRQVCFFAH TPEELRPLYV STGSAIPSPR SAQSAASVMD MAAALSLLPG SPSSVSAMSP  420
TPFNQPMSPS ANGISHSSMA WPQPNVPTLH LPGSNLQSSR LRSSFSARDI PPDNYNLLSD  480
FDSQQILNDL TCFSQPQNNS VSFSRSGWSK TLNPSNLDEM FTAEMSSPRF AADQAAAAVF  540
SPTHKSAYLN QLQQQQSMLS PINTSVFSPK NVEHHLMQAA FGAGSPGRMS PRSMEPISPR  600
GPRLSALAQR EMQQHQQLRS LSSRDLGSNN PVAHNVGSPV NSWSKWGSPN GKLDWSVNGE  660
ELGRLRRSSS FELGNNGEEP DLSWVQSLVK ESPPEVLKEK FAIPVPGTAP SPDVAVGLSS  720
NSQINPVLES WLEQMQIDKK QQPVV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0111s0230.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1451490.0EF145149.1 Populus trichocarpa clone WS01121_A14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298434.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_024438269.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_024438276.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA9PAD30.0A9PAD3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s27370.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]