PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0098s0400.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 326aa    MW: 36646.1 Da    PI: 5.4994
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0098s0400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.3e-31156214259
                             --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             +D ++WrKYGqK++kgs++prsYYrC+s  gC ++k+vers++dp++++itY+ eH h 
  SapurV1A.0098s0400.1.p 156 SDMWAWRKYGQKPIKGSPYPRSYYRCSSLkGCLARKQVERSSTDPSIFIITYTAEHSHA 214
                             79*************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-32140216IPR003657WRKY domain
SuperFamilySSF1182902.75E-26149216IPR003657WRKY domain
PROSITE profilePS5081131.961150216IPR003657WRKY domain
SMARTSM007745.9E-35155215IPR003657WRKY domain
PfamPF031062.8E-25157213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSSESVCMEE SWDLQAVVRS GCSSNYQEFA EIMNSSPSLF APLRFDQDEL LNFQKTYETP  60
TDFDELDGLY RPFYPALHQT LNSSQDKLLS TCTSTTSMSV REEVKEGRKV QKKKPLSESA  120
TCPNNTIDAT GAAKSKGRKK QHKRVVQHVK EDGLFSDMWA WRKYGQKPIK GSPYPRSYYR  180
CSSLKGCLAR KQVERSSTDP SIFIITYTAE HSHAHPTRRS SLAGSTRIKP STAPKETTPN  240
IEPSMPTIKE QRSPDFEGLL PTATPSMNSI KDEFVQNVSI KNEELSDQGQ ILEENESKEI  300
VMPDLVFGDD LFSTLEDLEG FLLDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-19146216877Probable WRKY transcription factor 4
2lex_A9e-19146216877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0098s0400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368768.10.0probable WRKY transcription factor 29
TrEMBLA0A3N7FWR60.0A0A3N7FWR6_POPTR; Uncharacterized protein
STRINGPOPTR_0001s09900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62173150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-35WRKY family protein