PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0089s0660.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 692aa MW: 80211.4 Da PI: 6.2565

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0089s0660.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.5	4e-22	68	159	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtklele 84 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk+t +++r r++ r+gC+ak+ ++ke ++w v ++++ SapurV1A.0089s0660.1.p 68 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPARKKSTAEHHRDRKSVRCGCDAKMYLSKEVvegVSQWFVVQFSNV 153 59******************8888.***************************************99877789***** PP FAR1 85 HnHela 90 HnHel SapurV1A.0089s0660.1.p 154 HNHELL 159 **96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.8E-20	68	159	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.0E-19	291	383	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.718	563	598	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.7E-4	571	597	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0021	573	600	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence Send to blast
MTSVPSKNIW IKRQQCPCGD WKCYVTCEGD VEETSVASQL EKNETFQSDS MVSPYVGMVF 60 KSDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPAR KKSTAEHHRD 120 RKSVRCGCDA KMYLSKEVVE GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIQEADQER 180 ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKIVQEN DALLTEKREN 240 DTMELLEACK VTKEMDGEFV YDFTMDENDK VENIVWSYGD SVRAYTLFGD VVYFDTSYRS 300 ITYGMHLGVW LGIDNNGKTI LFGCVLLQDE TARSFGWALQ AFIRLMKGKC PQTILTDLEL 360 GLKDAVRSEL PSTRHAISIW NIQPKISSWF FLSLGPRYPE LKSMFDDLYH AENADDFEHR 420 WSQMVSMFGL GSDKHIALLY SLRASWASSY MRGYFLARMA TSAYLKSVES FLKAICCAQT 480 CLRSFFEQVG SSSNFLNQLR QEMQYMLTKT CIPLEEHARN FLTPFAFNDF QHELVLSMQC 540 ALSEMPDGSY LVHHYKKMDA ERLVIWIPED EQILCTCKEF ESSGMLCRHT LRVFILKNYF 600 QLPEKYYLSR WRRESSLVFY DNQSTQTNDD GWFQEFESLT ETLLTESSIT KERSDYVRRE 660 LPKELKRLIS EVRKIPETDG AAMDLTLSPS G*

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence Send to blast

MTSVPSKNIW IKRQQCPCGD WKCYVTCEGD VEETSVASQL EKNETFQSDS MVSPYVGMVF  60
KSDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPAR KKSTAEHHRD  120
RKSVRCGCDA KMYLSKEVVE GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIQEADQER  180
ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKIVQEN DALLTEKREN  240
DTMELLEACK VTKEMDGEFV YDFTMDENDK VENIVWSYGD SVRAYTLFGD VVYFDTSYRS  300
ITYGMHLGVW LGIDNNGKTI LFGCVLLQDE TARSFGWALQ AFIRLMKGKC PQTILTDLEL  360
GLKDAVRSEL PSTRHAISIW NIQPKISSWF FLSLGPRYPE LKSMFDDLYH AENADDFEHR  420
WSQMVSMFGL GSDKHIALLY SLRASWASSY MRGYFLARMA TSAYLKSVES FLKAICCAQT  480
CLRSFFEQVG SSSNFLNQLR QEMQYMLTKT CIPLEEHARN FLTPFAFNDF QHELVLSMQC  540
ALSEMPDGSY LVHHYKKMDA ERLVIWIPED EQILCTCKEF ESSGMLCRHT LRVFILKNYF  600
QLPEKYYLSR WRRESSLVFY DNQSTQTNDD GWFQEFESLT ETLLTESSIT KERSDYVRRE  660
LPKELKRLIS EVRKIPETDG AAMDLTLSPS G*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0089s0660.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006373590.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_024443543.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_024443544.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_024443545.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_024443546.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_024443547.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_024443549.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A3N7G1P2	0.0	A0A3N7G1P2_POPTR; Uncharacterized protein
STRING	EOY28958	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	SapurV1A.0089s0660.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]