PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0060s0220.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family FAR1
Protein Properties Length: 581aa    MW: 66721.2 Da    PI: 6.6363
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0060s0220.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR129.13.3e-095514790
                    FAR1 47 ktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90
                            ++ k +r+r+++r+gC+a +++ k+      +w+vt +++ HnHe++
  SapurV1A.0060s0220.1.p  5 EDGKMQRNRKSSRCGCQAYMRIVKRAdfdVPEWRVTGFSNIHNHEMF 51
                            3467899**************98887676789*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-6551IPR004330FAR1 DNA binding domain
PfamPF105512.4E-8174227IPR018289MULE transposase domain
PROSITE profilePS509669.495371419IPR007527Zinc finger, SWIM-type
PfamPF044348.7E-8393417IPR007527Zinc finger, SWIM-type
SMARTSM005752.7E-5394421IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MKQSEDGKMQ RNRKSSRCGC QAYMRIVKRA DFDVPEWRVT GFSNIHNHEM FKLNETHLHP  60
ASGTMSPVDK SRICIFAKVG MSVRQMLRLM ELEKGVKLGC LPYTEIDVRN LLLSFRNVNQ  120
DNDAIDLIAM CKKLKDEDHN FKYDFKIDCN NRLEHIAWSY ASSVRLYEAF GDAVVFDTTH  180
HLDAYDMWLG IWVGVDNHGM ACLFSCVLLR KENMESFSWA LKIYEFLRLY NLESVQDFEE  240
GWSEMVEKYE LHANKHITSL YAFRSFWALS FLRNYFFGGK MDICQSGSIT AFIQRFLSAQ  300
SQLDYFVEEL ADIVDYKPKL PQKLHKVYLK TGSPIESHAA SVLTPYAFGK FQEELVLAPQ  360
YASFPVDEYC FQVRHHTQIS GGCRVIWDSC QGHISCSCSW FEYSGILCRH VLRVLSTNNC  420
FQIPDDYLPT RWQYVSSSSR LRMHSEKIQL LESMASTLMA ESVETKERLD VACEQISMIL  480
SHLRDLPTQT HGENAYSCPS DSLILPEVVD SGGIVNFTIE NPDDPVTLAK LKERQPRVGV  540
DISRKRRHHY GPCCGHFGHD ASDCSMMRSD QMDGTALGYL *
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0060s0220.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463357.10.0protein FAR1-RELATED SEQUENCE 11 isoform X2
SwissprotQ9SY662e-94FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A3N7FDY00.0A0A3N7FDY0_POPTR; Uncharacterized protein
TrEMBLA0A3N7FIX30.0A0A3N7FIX3_POPTR; Uncharacterized protein
STRINGPOPTR_0008s10810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.19e-97FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]