PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0037s0280.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 730aa    MW: 79318.4 Da    PI: 6.5944
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0037s0280.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07306326526
                             --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                             +C++f++ G C++Gd C +aHg
  SapurV1A.0037s0280.1.p 306 PCPDFRK-GACRRGDMCEYAHG 326
                             8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484033.11E-1539166IPR020683Ankyrin repeat-containing domain
PfamPF127965.0E-983156IPR020683Ankyrin repeat-containing domain
CDDcd002044.94E-1486165No hitNo description
Gene3DG3DSA:1.25.40.202.2E-1686167IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.25587180IPR020683Ankyrin repeat-containing domain
SMARTSM002480.01187117IPR002110Ankyrin repeat
SMARTSM002488.4E-4122154IPR002110Ankyrin repeat
PROSITE profilePS5008811.14122157IPR002110Ankyrin repeat
SMARTSM003564.0E-6301327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582306328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4306328IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-5306326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4334364IPR000571Zinc finger, CCCH-type
SMARTSM0035633336359IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MCCRLERLKL AAIPTPPTSS FEKTRPSNID MNHLTIKTED AFVNLLELAA NNDVEGIKKS  60
IEHDLSCADE IGLWYGRQKG SKQMVNDHRT PLMVAATYGS VDVLKVILSV SDVDVNRSCG  120
LDKSTALHCA ASGGAVNAVD VVKLLLAAGA DCTLVDANGH LPIDVITVPP KLQDARLILE  180
ELLAADGSLV EHNLRVSIAT SNSNSPPLSP SQENGSPLSG SDSPLKSKLY EAPVSFVSEK  240
KEYPVDPSLP DIKNSIYSTD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF  300
HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTNCAR RVCFFAHTVE  360
ELRPLYVSTG SAVPSPRSGT SAAAAMDFAA AMNLLPGSPS AASIMSPSPF TPPMSPSGNG  420
MPHSSLAWPQ PNVPALHLPG CNMQSSRLRS SLNARDIPAD YSLLPEFDVQ QQHLLSELSS  480
LSQPSLSNNS LNRSGRLKAL TPSNLDDFFS AESSSPRYAD QALASAVFSP THKSAVLNQF  540
QPQQSMLSPI NTNFSPKNVD HPLLQASFAS GRMSPRSVEP ISPMSSRSSV LAQREKLQQL  600
RSLSSRELGS NAAAIVGSPV NIWSKWGSSN GKPDWTVSTD ELGKLRRSNS FELGNGDDPD  660
LSWVQSLVKE SPTEMKEKLR MPISGSVAAT ASSSESSNMN SQIEPIDIDH VVESWVEQLQ  720
IDQLVAQQN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0037s0280.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323312.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLB9II600.0B9II60_POPTR; Uncharacterized protein
STRINGPOPTR_0016s05410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]