PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0032s0430.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 799aa    MW: 88216.4 Da    PI: 6.0164
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0032s0430.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.72e-08302321525
                             --SGGGGTS--TTTTT-SS-S CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                             +C+ff++ G+C +G++C+F H
  SapurV1A.0032s0430.1.p 302 ICDFFSK-GWCIRGSSCRFLH 321
                             8******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.596297324IPR000571Zinc finger, CCCH-type
SMARTSM003560.0062297323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6297322IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-6302321IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-4302322IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MPQISVANST NRNQKRRKKK TEPGALSPMP ASAAATGDDD EDLALPSSNP PLAQISDSDM  60
DIDNDDYEEE EDPEEEVGGR DNDDDDDDDD EEIKVEEEEV DQRRNDSRQH TVSVRQLGSH  120
STREMSELKE DSVNNFKWCG PLDRPLRLHK EKSCVNYADS RSPKLSKHLV FAQKNGTLEC  180
AVNKTDADAH TIKNRKGCSE AFGNSKTHLG NSSEALAVET AHPFVITGME VDAVLSMRNC  240
LGQGVNIVMG SKEEHKPVDV KSEDTKEQKA SRFSRLAASG TRARSISPST ELRDGNKRAA  300
VICDFFSKGW CIRGSSCRFL HTTNKADNIS QQSGVDEVAT REDPFDEGVR NILETPKFPH  360
FPDPVASSTG KEATFSSHFS PERLPPLEHK ENQRLHQLDD KHKLSPRQRE GIPRNAKHFS  420
SSKDDPGFSS SFKDVGIESF RQHWPGTDYG SYSSLINRGS LFSFSSTFDL SLLGSQKLPD  480
GDCASRSSSL LRSASAFSGS EPESLSLAGV PRDRLRLAEH KTKISSNDWE PSVPFRPSFF  540
ITPEMISSAG SKYDPLRDSF DLPNIGDKSF EFSFFSLGAS ISNTSQQPIY DSLSNQNFDT  600
EFNGEKSAIS SHDKPHGILL DKNCSTPGKD SFTTATVSGG AGTTDGENGS ALKEESASGI  660
GYDKVNRVTN KIDRDARPQI GVLRHKKDLK ADSVRQNNDM EVDQKIGDDV EKESKVLRHF  720
RAALIDFVRD MLKPTWREGH LSKDAHNTIV KKTVEKVLST LQPHQIPATV ESIKQYLSSS  780
QPKMAKLVEG YISKHGKS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0032s0430.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006377394.20.0protein FRIGIDA-ESSENTIAL 1 isoform X1
TrEMBLA0A2K1YG220.0A0A2K1YG22_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-34C3H family protein