PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0012s0580.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ERF | ||||||||
Protein Properties | Length: 230aa MW: 24845.8 Da PI: 9.7562 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64 | 3.1e-20 | 27 | 76 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdps+ + r++lg+f+taeeAa+a++ a+++++g SapurV1A.0012s0580.1.p 27 HFRGVRKRP-WGRYAAEIRDPSK---KSRVWLGTFDTAEEAARAYDTAAREFRG 76 69*******.**********965...6************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.5E-13 | 27 | 76 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-40 | 27 | 90 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.96 | 27 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-22 | 27 | 85 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-32 | 27 | 84 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.38E-32 | 27 | 85 | No hit | No description |
PRINTS | PR00367 | 4.6E-11 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-11 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MAPREKKAAI KADGGGGGGG GGGKEVHFRG VRKRPWGRYA AEIRDPSKKS RVWLGTFDTA 60 EEAARAYDTA AREFRGSKAK TNFPYPSCEN AKKNVVSIDN SKKAANKNNS CGGGNQSPSH 120 STVEFSSGDA PLDLNLDPGA STVRLPFQPM VMNHQQVIYF DALMKSQYRR MVFDHGYRHH 180 PDQSVVFSCG GVLSDSDSSS VVDLNHQDVK TPRRSVGLDL NLPPPPEIA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-22 | 17 | 85 | 4 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0012s0580.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011027786.1 | 1e-126 | PREDICTED: ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A2K1YG08 | 7e-91 | A0A2K1YG08_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s04720.1 | 1e-121 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 2e-26 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0012s0580.1.p |